Factsheet for Os05t0543400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G365800.1	Wheat	cytosol	82.54	83.71
TraesCS1B01G383400.1	Wheat	golgi	82.25	83.43
HORVU1Hr1G079070.1	Barley	cytosol	77.18	83.28
TraesCS1D01G371200.2	Wheat	cytosol	83.1	82.87
EES19888	Sorghum	cytosol	82.25	82.72
Os01t0703400-01	Rice	cytosol, mitochondrion	78.59	79.04
Zm00001d009431_P001	Maize	cytosol	81.97	72.75
Os01t0695300-01	Rice	cytosol	62.25	71.99
Os04t0657300-00	Rice	cytosol, nucleus	3.1	55.0
Os04t0657100-01	Rice	cytosol	52.39	47.45

Protein Annotations

Gene3D:1.10.600.10	EntrezGene:4339489	MapMan:9.1.3.2	ProteinID:AAU43998.1	EMBL:AK073822	EMBL:AK100273
ProteinID:BAF18118.1	ProteinID:BAS95151.1	ProteinID:EEE64559.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004161
GO:GO:0004337	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0045337	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	EnsemblPlantsGene:Os05g0543400	EnsemblPlants:Os05t0543400-01	PFAM:PF00348
ScanProsite:PS00444	ScanProsite:PS00723	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS
UniProt:Q65XM9	SUPFAM:SSF48576	UniParc:UPI000043F3FF	RefSeq:XP_015637294.1	SEG:seg	:

Description

farnesyl diphosphate synthase 2Similar to Farnesyl diphosphate synthase (Fragment). (Os05t0543400-01);Similar to Farnesyl diphosphate synthase (Fragment). (Os05t0543400-02)

Coordinates

chr5:-:26966645..26969894

Molecular Weight (calculated)

40636.7 Da

IEP (calculated)

5.505

GRAVY (calculated)

-0.263

Length

355 amino acids

Sequence
(BLAST)

001: MAAANGSACG GGGVDKEKEE FKQIYGVLKE ELLRDPAFEF TDSSRQWIDR MLDYNVPGGK CNRGLSVVDS YKLLKGTNVL SQEDMFLAST LGWCVEWLQA
101: YFLVLDDIMD DSHTRRGQPC WFRVPQVGSI AINDGIILRN HITRMLRLHF RGKLYYADLL DLFNEVEFKT ASGQLLDLIT THEGEKDLNK YNIGVHRRIV
201: QYKTSYYSFY LPVACALLLS GEDLTKYGAV EDILVKMGIY FQVQDDYLDC YGDPKFIGKI GTDIEDYKCS WLVVQALERA DESQKSVLFE NYGKKDPACV
301: AKVKSLYREL NLEAVFLDYE NESYKKLIAD IEAQPSIAVQ NVLKSFLHKI YKRQK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.