CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G365800.1	Wheat	cytosol	87.82	88.57
HORVU1Hr1G079070.1	Barley	cytosol	82.15	88.15
TraesCS1B01G383400.1	Wheat	golgi	86.97	87.71
TraesCS1D01G371200.2	Wheat	cytosol	86.69	85.96
Zm00001d009431_P001	Maize	cytosol	94.9	83.75
EES01337	Sorghum	cytosol	83.57	82.87
Os05t0543400-01	Rice	cytosol	82.72	82.25
VIT_19s0015g01010.t01	Wine grape	cytosol	70.25	72.73
KRH36635	Soybean	cytosol, nucleus	70.25	72.51
KRH11625	Soybean	cytosol, nucleus	69.97	72.22
CDY17706	Canola	cytosol	69.69	71.72
CDX77796	Canola	cytosol	69.41	71.43
Solyc10g005820.1.1	Tomato	cytosol	24.08	71.43
Bra022156.1-P	Field mustard	cytosol	68.56	70.76
CDY28904	Canola	cytosol	68.56	70.76
KRH63452	Soybean	cytosol	24.08	69.67
PGSC0003DMT400022420	Potato	cytosol	67.14	69.3
AT4G17190.1	Thale cress	cytosol	67.14	69.3
PGSC0003DMT400076602	Potato	cytosol	64.87	66.96
Solyc12g015860.1.1	Tomato	cytosol, plastid	64.59	66.67
Solyc10g005840.2.1	Tomato	cytosol, mitochondrion	46.46	66.13
PGSC0003DMT400037236	Potato	cytosol	56.37	65.03
Bra024917.1-P	Field mustard	mitochondrion	67.14	63.71
AT5G47770.1	Thale cress	cytosol, mitochondrion	68.27	62.76
CDY68039	Canola	cytosol, mitochondrion, plastid	68.27	62.44
KRH30637	Soybean	cytosol	14.73	59.09
KRG89761	Soybean	cytosol	34.56	54.46
Solyc10g005810.2.1	Tomato	cytosol, mitochondrion	39.66	52.04
KXG27307	Sorghum	cytosol	51.84	45.19

Protein Annotations

Gene3D:1.10.600.10	EntrezGene:8061092	MapMan:9.1.3.2	UniProt:C5YUX0	EnsemblPlants:EES19888	ProteinID:EES19888
ProteinID:EES19888.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004161	GO:GO:0004337	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0045337	InterPro:IPR008949
InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF00348	ScanProsite:PS00444	ScanProsite:PS00723	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11
InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS	EnsemblPlantsGene:SORBI_3009G216800	SUPFAM:SSF48576	unigene:Sbi.5212	UniParc:UPI0001A891DE
RefSeq:XP_002441458.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:56105054..56108847

Molecular Weight (calculated)

40393.2 Da

IEP (calculated)

4.832

GRAVY (calculated)

-0.245

Length

353 amino acids

Sequence
(BLAST)

001: MAADGNGAAA AGGDTRAVFA QIYKTLKEEL LTDPAFEFTE ESHQWIDRMV DYTVLGGKCN RGLSVVDSYK LLKGADTLSE EEMFLACTLG WCIEWLQAFF
101: LVLDDIMDES HTRRGQPCWF RVPQVGFIAV NDGIILRNHI SRILRRHFKG KPYYADLLDL FNEVEFKTAS GQLLDLITTH EGEKDLTKYN ITVHGRIVQY
201: KTAYYSFYLP VACALLLSGE NLDKYGDVEN ILVEMGTYFQ VQDDYLDCYG DPEFIGKIGT DIEDYKCSWL VVQALERADE SQKRILFENY GKKDPACVAK
301: VKNLYKELNL EAVFQEYESE SYKKLIADIE AQPSIAVQNV LKSFLHKIYK RQK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.