Factsheet for VIT_19s0015g01010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022420	Potato	cytosol	81.52	81.29
Solyc10g005820.1.1	Tomato	cytosol	27.86	79.83
PGSC0003DMT400076602	Potato	cytosol	79.47	79.24
Solyc12g015860.1.1	Tomato	cytosol, plastid	78.01	77.78
GSMUA_Achr3P28530_001	Banana	cytosol	77.42	76.08
Solyc10g005840.2.1	Tomato	cytosol, mitochondrion	55.13	75.81
GSMUA_Achr9P22220_001	Banana	cytosol	78.59	75.07
PGSC0003DMT400037236	Potato	cytosol	66.28	73.86
Zm00001d043727_P001	Maize	cytosol	75.07	72.11
EES01337	Sorghum	cytosol	74.78	71.63
Zm00001d011673_P001	Maize	cytosol	73.61	70.7
TraesCS3B01G286300.2	Wheat	cytosol	73.31	70.62
TraesCS1A01G365800.1	Wheat	cytosol	72.14	70.29
EES19888	Sorghum	cytosol	72.73	70.25
TraesCS3D01G255200.1	Wheat	cytosol	72.73	70.06
TraesCS1B01G383400.1	Wheat	golgi	71.85	70.0
TraesCS1D01G371200.2	Wheat	cytosol	72.14	69.1
TraesCS3A01G254300.1	Wheat	cytosol	68.62	66.1
TraesCS3A01G258600.1	Wheat	cytosol	67.45	65.16
TraesCS3D01G258500.1	Wheat	cytosol	67.16	65.06
Zm00001d009431_P001	Maize	cytosol	73.9	63.0
Solyc10g005810.2.1	Tomato	cytosol, mitochondrion	49.27	62.45
Os04t0657300-00	Rice	cytosol, nucleus	3.23	55.0
TraesCS2B01G530100.1	Wheat	cytosol	59.53	49.51
TraesCS2D01G502400.1	Wheat	cytosol	59.53	49.51
TraesCS2A01G501900.1	Wheat	cytosol	59.24	49.27
HORVU1Hr1G043190.1	Barley	extracellular	15.25	45.61
KXG27307	Sorghum	cytosol	53.08	44.69

Protein Annotations

Gene3D:1.10.600.10	EntrezGene:100232975	wikigene:100232975	MapMan:9.1.3.2	ProteinID:AAX76910	ProteinID:AAX76910.1
ProteinID:ABD77586	ProteinID:ABD77586.1	EMBL:AY966012	ProteinID:CBI39786	ProteinID:CBI39786.3	UniProt:D7UAM1
EMBL:DQ375813	EMBL:FN596747	GO:GO:0003674	GO:GO:0003824	GO:GO:0004161	GO:GO:0004337
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0045337
InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	EntrezGene:LOC100232975	wikigene:LOC100232975	PFAM:PF00348	ScanProsite:PS00444
ScanProsite:PS00723	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS	SUPFAM:SSF48576
TIGR:TC55561	UniParc:UPI00015CBA69	ArrayExpress:VIT_19s0015g01010	EnsemblPlantsGene:VIT_19s0015g01010	EnsemblPlants:VIT_19s0015g01010.t01	unigene:Vvi.6767

Description

No Description!

Coordinates

chr19:+:9094483..9098631

Molecular Weight (calculated)

39067.0 Da

IEP (calculated)

5.489

GRAVY (calculated)

-0.201

Length

341 amino acids

Sequence
(BLAST)

001: MSETKSKFLE VYSVLKSELL NDPAFEFTDD SRQWVERMLD YNVPGGKLNR GLSVVDSYKL LQGRQLTDDE VFLACVLGWC IEWLQAYFLV LDDIMDNSHT
101: RRGQPCWFRV PKVGMIAAND GVILRNQIPR ILKNHFKGKP YYVDLLDLFN EVEFQTASGQ MIDLITTIEG EKDLSKYSLP LHRRIVQYKT AYYSFYLPVA
201: CALLMAGENL DNHTSVKDIL VQMGIYFQVQ DDYLDCFGDP QVIGKIGTDI EDFKCSWLVV KALEICNEEQ KKTLYGNYGK ADPANVAKVK ALYKDLDLQG
301: VFLEYESKSY ETLVSSIEAH PSKAVQAVLK SFLGKIYKRQ K

Best Arabidopsis Sequence Match ( AT4G17190.1 )
(BLAST)

001: MADLKSTFLD VYSVLKSDLL QDPSFEFTHE SRQWLERMLD YNVRGGKLNR GLSVVDSYKL LKQGQDLTEK ETFLSCALGW CIEWLQAYFL VLDDIMDNSV
101: TRRGQPCWFR KPKVGMIAIN DGILLRNHIH RILKKHFREM PYYVDLVDLF NEVEFQTACG QMIDLITTFD GEKDLSKYSL QIHRRIVEYK TAYYSFYLPV
201: ACALLMAGEN LENHTDVKTV LVDMGIYFQV QDDYLDCFAD PETLGKIGTD IEDFKCSWLV VKALERCSEE QTKILYENYG KAEPSNVAKV KALYKELDLE
301: GAFMEYEKES YEKLTKLIEA HQSKAIQAVL KSFLAKIYKR QK

Arabidopsis Description

FPS2Farnesyl pyrophosphate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q43315]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.