CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63452	Soybean	cytosol	47.77	87.7
KRH30637	Soybean	cytosol	29.91	76.14
Os04t0657300-00	Rice	cytosol, nucleus	4.91	55.0
KRH36635	Soybean	cytosol, nucleus	70.54	46.2
KRH11625	Soybean	cytosol, nucleus	67.86	44.44
Bra022156.1-P	Field mustard	cytosol	56.7	37.13
CDY28904	Canola	cytosol	56.7	37.13
CDX77796	Canola	cytosol	56.7	37.03
CDY17706	Canola	cytosol	56.7	37.03
GSMUA_Achr3P28530_001	Banana	cytosol	57.14	36.89
AT4G17190.1	Thale cress	cytosol	55.8	36.55
GSMUA_Achr9P22220_001	Banana	cytosol	57.14	35.85
Zm00001d043727_P001	Maize	cytosol	54.91	34.65
EES19888	Sorghum	cytosol	54.46	34.56
TraesCS3D01G258500.1	Wheat	cytosol	53.57	34.09
TraesCS3A01G258600.1	Wheat	cytosol	53.57	33.99
EES01337	Sorghum	cytosol	54.02	33.99
Zm00001d011673_P001	Maize	cytosol	53.57	33.8
TraesCS3D01G255200.1	Wheat	cytosol	53.12	33.62
TraesCS3B01G286300.2	Wheat	cytosol	53.12	33.62
TraesCS3A01G254300.1	Wheat	cytosol	53.12	33.62
TraesCS1A01G365800.1	Wheat	cytosol	51.79	33.14
TraesCS1B01G383400.1	Wheat	golgi	51.79	33.14
AT5G47770.1	Thale cress	cytosol, mitochondrion	56.25	32.81
CDY68039	Canola	cytosol, mitochondrion, plastid	56.25	32.64
TraesCS1D01G371200.2	Wheat	cytosol	51.79	32.58
Bra024917.1-P	Field mustard	mitochondrion	54.02	32.53
Zm00001d009431_P001	Maize	cytosol	53.12	29.75
TraesCS2D01G502400.1	Wheat	cytosol	49.11	26.83
TraesCS2B01G530100.1	Wheat	cytosol	49.11	26.83
TraesCS2A01G501900.1	Wheat	cytosol	49.11	26.83
KXG27307	Sorghum	cytosol	40.62	22.47
HORVU1Hr1G043190.1	Barley	extracellular	3.12	6.14

Protein Annotations

Gene3D:1.10.600.10	MapMan:9.1.3.2	EMBL:ACUP02012270	EnsemblPlantsGene:GLYMA_20G047100	GO:GO:0003674	GO:GO:0003824
GO:GO:0004161	GO:GO:0004337	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0045337	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:K7N1M8	EnsemblPlants:KRG89761
ProteinID:KRG89761	ProteinID:KRG89761.1	PFAM:PF00348	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	InterPro:Polyprenyl_synt
SUPFAM:SSF48576	UniParc:UPI0002959CAF	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:8839578..8841325

Molecular Weight (calculated)

25498.2 Da

IEP (calculated)

4.778

GRAVY (calculated)

-0.389

Length

224 amino acids

Sequence
(BLAST)

001: MFHYASYFCQ DVGKGEGSDD VGSDALDFEG LTPVDVRTAH DTGGVEDMSG LEREVPFWRR PELYWKGMSW ARQRYKTAYF SFYLPVACAL LMAGEDLDKN
101: VDVKNILVEM GTYFQVQDCF GDPQTIGKIG TDIEDFKCSW LIVKAFELSN EQQKKFLQEN YGKPDPENVA KVKALYNELN LQGVFEEYES GSYVKLVSSI
201: EAHPSKAVQV VLKSFLAKIY KRQK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.