Factsheet for Os01t0703400-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 15069638

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G286300.2	Wheat	cytosol	90.08	89.83
Zm00001d043727_P001	Maize	cytosol	90.08	89.58
EES01337	Sorghum	cytosol	89.8	89.04
HORVU3Hr1G065960.4	Barley	cytosol	89.52	89.01
TraesCS3D01G255200.1	Wheat	cytosol	88.95	88.7
Zm00001d011673_P001	Maize	cytosol	86.97	86.48
HORVU2Hr1G073510.1	Barley	cytosol	15.86	83.58
TraesCS3A01G254300.1	Wheat	cytosol	81.3	81.07
Os05t0543400-01	Rice	cytosol	79.04	78.59
HORVU6Hr1G033960.1	Barley	endoplasmic reticulum	40.23	77.17
HORVU7Hr1G080750.1	Barley	endoplasmic reticulum, plasma membrane	40.23	77.17
Os01t0695300-01	Rice	cytosol	64.87	74.59
Os04t0657300-00	Rice	cytosol, nucleus	3.12	55.0
Os04t0657100-01	Rice	cytosol	49.29	44.39

Protein Annotations

Gene3D:1.10.600.10	EntrezGene:4324245	MapMan:9.1.3.2	EMBL:AK061657	ProteinID:BAA36276.1	ProteinID:BAB92292.2
ProteinID:BAF05914.1	ProteinID:BAS73911.1	EMBL:D85317	GO:GO:0003674	GO:GO:0003824	GO:GO:0004161
GO:GO:0004337	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0045337	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:O04882	EnsemblPlantsGene:Os01g0703400	EnsemblPlants:Os01t0703400-01
PFAM:PF00348	ScanProsite:PS00444	ScanProsite:PS00723	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	InterPro:Polyprenyl_synt
InterPro:Polyprenyl_synt_CS	SUPFAM:SSF48576	UniParc:UPI00000AD083	RefSeq:XP_015628129.1	:	:

Description

farnesyl diphosphate synthase 1, farnesyl diphosphate synthase, FDP synthaseSimilar to Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS) (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]. (Os01t0703400-01)

Coordinates

chr1:+:29158306..29162547

Molecular Weight (calculated)

40678.6 Da

IEP (calculated)

4.900

GRAVY (calculated)

-0.265

Length

353 amino acids

Sequence
(BLAST)

001: MAAAVVANGA SGDSSKAAFA EIYSRLKEEM LEDPAFEFTD ESLQWIDRML DYNVLGGKCN RGISVIDSFK MLKGTDVLNK EETFLACTLG WCIEWLQAYF
101: LVLDDIMDNS QTRRGQPCWF RVPQVGLIAV NDGIILRNHI SRILQRHFKG KLYYVDLIDL FNEVEFKTAS GQLLDLITTH EGEKDLTKYN LTVHRRIVQY
201: KTAYYSFYLP VACALLLSGE NLDNFGDVKN ILVEMGTYFQ VQDDYLDCYG DPEFIGKIGT DIEDYKCSWL VVQALERADE NQKHILFENY GKPDPECVAK
301: VKDLYKELNL EAVFHEYERE SYNKLIADIE AHPNKAVQNV LKSFLHKIYK RQK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.