Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- plasma membrane 1
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045778_P001 | Maize | plasma membrane | 57.25 | 57.45 |
| EER89616 | Sorghum | plasma membrane | 57.61 | 56.58 |
| Os04t0168400-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 23.19 | 34.78 |
| Os06t0285900-00 | Rice | nucleus | 22.46 | 26.61 |
| Os06t0295300-00 | Rice | golgi, mitochondrion, nucleus, plasma membrane | 23.91 | 10.8 |
| Os06t0294400-00 | Rice | plasma membrane | 23.55 | 10.11 |
| Os11t0682000-01 | Rice | plasma membrane | 22.83 | 10.1 |
| Os11t0144900-01 | Rice | plasma membrane | 27.17 | 8.47 |
| Os06t0296700-01 | Rice | plasma membrane | 25.36 | 8.23 |
| Os06t0293100-00 | Rice | cytosol | 14.49 | 8.15 |
| Os06t0296100-00 | Rice | plasma membrane | 25.72 | 8.1 |
| Os06t0297400-03 | Rice | plasma membrane | 28.26 | 8.06 |
| Os06t0294000-01 | Rice | plasma membrane | 25.36 | 7.63 |
| Os06t0293500-01 | Rice | plasma membrane | 23.19 | 7.48 |
| Os06t0295000-01 | Rice | cytosol, peroxisome, plasma membrane | 11.59 | 7.37 |
| Os06t0292100-00 | Rice | plasma membrane | 24.28 | 7.2 |
| Os11t0220500-00 | Rice | plasma membrane | 21.74 | 7.08 |
| Os06t0296900-00 | Rice | plasma membrane | 23.19 | 6.69 |
| Os06t0291800-00 | Rice | plasma membrane | 24.28 | 5.92 |
| Os06t0292400-00 | Rice | plasma membrane | 23.91 | 5.42 |
| Os06t0293000-00 | Rice | vacuole | 2.9 | 2.8 |
| Os11t0220600-00 | Rice | mitochondrion, plasma membrane | 1.81 | 1.82 |
| Os12t0141000-01 | Rice | plasma membrane | 1.45 | 1.73 |
| Os06t0294200-01 | Rice | cytosol, peroxisome, plasma membrane | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os06t0286146-00 | EnsemblPlantsGene:Os06g0286146 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:PGG_dom |
| ncoils:Coil | PANTHER:PTHR24177 | PANTHER:PTHR24177:SF62 | PFAM:PF13962 | ProteinID:BAS97276.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000393AD5A | UniProt:A0A0P0WVA6 | MapMan:35.2 | : | : |
Description
Similar to Embryogenesis transmembrane protein. (Os06t0286146-00)
Coordinates
chr6:-:10279629..10280577
Molecular Weight (calculated)
30335.4 Da
IEP (calculated)
8.067
GRAVY (calculated)
-0.050
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: PYQWPTSERQ CRRRRRRSGD AGHGEPRASP DISHRSRPGV DGDAAALPPA YTGVLYLHHH KKEEEAAAAA ALGQLNEAKK KREKWLKEMS GWLMVLAVLA
101: ASVTYHAGLN PPGGFWQHND GESHVAGTPV LQSNFPQRYT VFFYFNATAF VTSVVIIILL MNESFYHSEA KVVALEIIAV LDMVCLMGAY IAGSTHAAPC
201: SIYVTVLTVV VFLYVVYAAE LLRKIWWLII HAPVHDTAAT GGGKLPAVPQ HIVEQASPHH RCHADDVDSS MSAPPR
101: ASVTYHAGLN PPGGFWQHND GESHVAGTPV LQSNFPQRYT VFFYFNATAF VTSVVIIILL MNESFYHSEA KVVALEIIAV LDMVCLMGAY IAGSTHAAPC
201: SIYVTVLTVV VFLYVVYAAE LLRKIWWLII HAPVHDTAAT GGGKLPAVPQ HIVEQASPHH RCHADDVDSS MSAPPR
001: MEINGQEGHR YEESSSEWFV KYLKRQGDWL EKTRGNLMVT ATVIAGMSFQ VMVNPPGGVW QSDNCSFGNQ TGTAPFCKGR AGTAVLEYES SKRIAYIGMI
101: ISSTVSFSTS MSLILLVISG IRLRNRMIMA ILGTFMVVAV LCISAAFFFA IVLVQSDDQI IRYILLIYVG FWVVFPVLIL LIQLVRFIGW LICFMCCCCC
201: PRRRRFH
101: ISSTVSFSTS MSLILLVISG IRLRNRMIMA ILGTFMVVAV LCISAAFFFA IVLVQSDDQI IRYILLIYVG FWVVFPVLIL LIQLVRFIGW LICFMCCCCC
201: PRRRRFH
Arabidopsis Description
AT3G13950 protein [Source:UniProtKB/TrEMBL;Acc:B9DG91]
SUBAcon: [cytosol,plasma membrane,peroxisome]
SUBAcon: [cytosol,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.