Factsheet for PGSC0003DMT400038021

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
endoplasmic reticulum 4
plasma membrane 7
vacuole 5
golgi 4
extracellular 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

extracellular: 28961394

msms PMID: 28961394 doi

E Elagamey, A Sinha, K Narula, MAE Abdellatef, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, New Delhi, India., Plant Pathology Research Institute, Agricultural Research Center (ARC), Giza, Egypt.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65623	Canola	plasma membrane	78.48	27.56
CDX69128	Canola	plasma membrane	79.32	27.53
KRH14010	Soybean	plasma membrane	76.37	27.01
KRH74104	Soybean	plasma membrane	77.64	25.88
Bra011604.1-P	Field mustard	plasma membrane	80.17	25.68
CDX75492	Canola	plasma membrane	80.17	25.68
PGSC0003DMT400048038	Potato	plasma membrane	78.06	25.62
AT4G35300.7	Thale cress	plasma membrane	78.9	25.3
KRH51319	Soybean	nucleus, plasma membrane	78.48	25.2
KRH60612	Soybean	plasma membrane	77.22	24.93
VIT_03s0038g03940.t01	Wine grape	plasma membrane	77.22	24.76
PGSC0003DMT400035507	Potato	endoplasmic reticulum, plasma membrane, vacuole	73.84	24.2
PGSC0003DMT400025886	Potato	plasma membrane	73.0	23.47
PGSC0003DMT400001526	Potato	plasma membrane	32.91	15.51
PGSC0003DMT400026885	Potato	plasma membrane	30.8	13.39
PGSC0003DMT400085968	Potato	cytosol, plasma membrane, vacuole	2.11	1.29

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.1.4	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846
UniProt:M1B682	InterPro:MFS_dom	InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf	PFAM:PF00083	EnsemblPlantsGene:PGSC0003DMG400014664
PGSC:PGSC0003DMG400014664	EnsemblPlants:PGSC0003DMT400038021	PRINTS:PR00171	ScanProsite:PS00216	ScanProsite:PS00217	PFscan:PS50850
PANTHER:PTHR23500	PANTHER:PTHR23500:SF180	SUPFAM:SSF103473	InterPro:Sugar/inositol_transpt	InterPro:Sugar_transporter_CS	TMHMM:TMhelix
UniParc:UPI000294E149	SEG:seg	:	:	:	:

Description

Sugar transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400014664]

Coordinates

chr1:+:88391789..88392779

Molecular Weight (calculated)

26004.7 Da

IEP (calculated)

7.796

GRAVY (calculated)

0.778

Length

237 amino acids

Sequence
(BLAST)

001: MSGAVLVAVA AAIGSFLQGW DNATIAGSIL YIKKEFNLET QPTMEGLIVA MSLVGAVLMT TCSGAIADWL GRRPLLITSS VLYFVSGLVM LWSPNIYVLL
101: LARLLNGFGV GLAVTLVPIY ISETAPPEIR GLLNTLPQFT GCVGMFFSYC MVFGMSLMSS PTWRLMLGVL SIPSILYFIL TIFYFPESPR WLVSKGRMLD
201: AKRVLQRLRG QEDVSGELME FVCDFICIIK FAKDIAT

Best Arabidopsis Sequence Match ( AT4G35300.4 )
(BLAST)

001: MSGAVLVAIA AAVGNLLQGW DNATIAGAVL YIKKEFNLES NPSVEGLIVA MSLIGATLIT TCSGGVADWL GRRPMLILSS ILYFVGSLVM LWSPNVYVLL
101: LGRLLDGFGV GLVVTLVPIY ISETAPPEIR GLLNTLPQFT GSGGMFLSYC MVFGMSLMPS PSWRLMLGVL FIPSLVFFFL TVFFLPESPR WLVSKGRMLE
201: AKRVLQRLRG REDVSGEMAL LVEGLGIGGE TTIEEYIIGP ADEVTDDHDI AVDKDQIKLY GAEEGLSWVA RPVKGGSTMS VLSRHGSTMS RRQGSLIDPL
301: VTLFGSVHEK MPDTGSMRSA LFPHFGSMFS VGGNQPRHED WDEENLVGEG EDYPSDHGDD SEDDLHSPLI SRQTTSMEKD MPHTAHGTLS TFRHGSQVQG
401: AQGEGAGSMG IGGGWQVAWK WTEREDESGQ KEGGFKRIYL HQEGFPGSRR GSIVSLPGGD GTGEADFVQA SALVSQPALY SKDLLKEHTI GPAMVHPSET
501: TKGSIWHDLH DPGVKRALVV GVGLQILQQF SGINGVLYYT PQILEQAGVG ILLSNMGISS SSASLLISAL TTFVMLPAIA VAMRLMDLSG RRTLLLTTIP
601: ILIASLLVLV ISNLVHMNSI VHAVLSTVSV VLYFCFFVMG FGPAPNILCS EIFPTRVRGI CIAICALTFW ICDIIVTYSL PVLLKSIGLA GVFGMYAIVC
701: CISWVFVFIK VPETKGMPLE VITEFFSVGA RQAEAAKNE

Arabidopsis Description

TMT2TMT2 [Source:UniProtKB/TrEMBL;Acc:A0A178V1T0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.