CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 3
plasma membrane 5
vacuole 3
golgi 3
extracellular 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65623	Canola	plasma membrane	96.93	98.07
CDX75492	Canola	plasma membrane	98.83	91.22
AT4G35300.7	Thale cress	plasma membrane	93.7	86.6
PGSC0003DMT400038021	Potato	extracellular	27.53	79.32
CDY33275	Canola	extracellular, golgi, vacuole	13.47	77.31
KRH60612	Soybean	plasma membrane	74.23	69.07
KRH14010	Soybean	plasma membrane	67.5	68.81
VIT_03s0038g03940.t01	Wine grape	plasma membrane	74.38	68.74
KRH74104	Soybean	plasma membrane	71.45	68.64
KRH51319	Soybean	nucleus, plasma membrane	73.94	68.43
CDY31497	Canola	plasma membrane	59.0	63.77
CDY29502	Canola	plasma membrane	61.2	63.43
CDX78009	Canola	plasma membrane	61.79	63.08
CDY33276	Canola	plasma membrane	61.49	62.87
CDY16303	Canola	plasma membrane	61.49	62.69
CDX73717	Canola	plasma membrane	62.37	62.56
CDY33650	Canola	plasma membrane	61.79	60.55
CDX96618	Canola	plasma membrane	62.23	58.62
CDY28736	Canola	cytosol, plasma membrane, vacuole	22.11	30.02
CDY43152	Canola	cytosol, plasma membrane, vacuole	22.11	29.96
CDY23466	Canola	plasma membrane	21.38	29.03
CDY49922	Canola	plasma membrane	21.23	28.83
CDY38076	Canola	cytosol, plasma membrane, vacuole	21.08	28.69
CDX85478	Canola	plasma membrane	20.94	28.32
CDY33006	Canola	plastid	22.99	28.29
CDX92030	Canola	plasma membrane	20.79	28.29
CDX74227	Canola	cytosol, plasma membrane, vacuole	19.77	27.95
CDY54245	Canola	plastid	22.84	27.91
CDX92028	Canola	cytosol, mitochondrion, peroxisome, vacuole	19.33	27.5
CDY47336	Canola	golgi, plasma membrane	9.22	24.14

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.1.4	GO:A0A078C237	EnsemblPlants:CDX69128	ProteinID:CDX69128	ProteinID:CDX69128.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00130914001	InterPro:IPR020846	InterPro:MFS_dom
InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf	PFAM:PF00083	PRINTS:PR00171	ScanProsite:PS00216	ScanProsite:PS00217
PFscan:PS50850	PANTHER:PTHR23500	PANTHER:PTHR23500:SF165	SUPFAM:SSF103473	InterPro:Sugar/inositol_transpt	InterPro:Sugar_transporter_CS
TMHMM:TMhelix	UniParc:UPI0004EDD019	SEG:seg	:	:	:

Description

BnaC01g03250D

Coordinates

chrLK031789:-:3084246..3088011

Molecular Weight (calculated)

73898.5 Da

IEP (calculated)

4.924

GRAVY (calculated)

0.403

Length

683 amino acids

Sequence
(BLAST)

001: MSGAVLVAVA AAIGNLLQGW DNATIAGAVL YIKKEFHLES NPSMEGLIVA MSLIGATLIT TWSGGVADWL GRRPMLILSS VLYFVGSLVM LWSPNVYVLL
101: LGRLLDGFGV GLVVTLVPIY ISETAPPEIR GLLNTLPQFA GSGGMFLSYC MVFGMSLMPS PSWRLMLGVL FVPSLVFFFL TIFFLPESPR WLVSKGRMLE
201: AKRVLQRLRG REDVSGEMAL LVEGLGTGGE TTIEEYIIGP ADDVADDLDI AVDKDQIKLY GAEEGLSWVA RPVKGGSTLS VLSRHGSTMS RRQGSLVDPL
301: VTLFGSVHEK MPETGSMRSA LNEEWDEENL VGEGEDYPTD RGEDSDDDLH SPLISLQGAH GEGGGAGSMG IGGGWQVAWK WTEREDESGQ KEGGFKRIYL
401: HQEGFPGSRQ FVQASALVSQ PALYSKDLLR EHTIGPAMVH PSETVKGSLW HDLQDPGVKR ALFVGVGLQI LQQFSGINGV LYYTPQILEQ AGVGILLSNL
501: GISSSSSSLL ISALTTFVML PAIAVAMRLM DLSGRRTLLL TTIPILIASL IVLVISNLVH MNSIVHAVLS TVSVVLYFCF FVMGFGPTPN ILCSEIFPTR
601: VRGICIAICA LTFWICDIIV TYSLPVLLKS IGLAGVFGMY AVVCCISWAF VYLKVPETKG MPLEVITEFF SLGARQAEAE KNN

Best Arabidopsis Sequence Match ( AT4G35300.4 )
(BLAST)

001: MSGAVLVAIA AAVGNLLQGW DNATIAGAVL YIKKEFNLES NPSVEGLIVA MSLIGATLIT TCSGGVADWL GRRPMLILSS ILYFVGSLVM LWSPNVYVLL
101: LGRLLDGFGV GLVVTLVPIY ISETAPPEIR GLLNTLPQFT GSGGMFLSYC MVFGMSLMPS PSWRLMLGVL FIPSLVFFFL TVFFLPESPR WLVSKGRMLE
201: AKRVLQRLRG REDVSGEMAL LVEGLGIGGE TTIEEYIIGP ADEVTDDHDI AVDKDQIKLY GAEEGLSWVA RPVKGGSTMS VLSRHGSTMS RRQGSLIDPL
301: VTLFGSVHEK MPDTGSMRSA LFPHFGSMFS VGGNQPRHED WDEENLVGEG EDYPSDHGDD SEDDLHSPLI SRQTTSMEKD MPHTAHGTLS TFRHGSQVQG
401: AQGEGAGSMG IGGGWQVAWK WTEREDESGQ KEGGFKRIYL HQEGFPGSRR GSIVSLPGGD GTGEADFVQA SALVSQPALY SKDLLKEHTI GPAMVHPSET
501: TKGSIWHDLH DPGVKRALVV GVGLQILQQF SGINGVLYYT PQILEQAGVG ILLSNMGISS SSASLLISAL TTFVMLPAIA VAMRLMDLSG RRTLLLTTIP
601: ILIASLLVLV ISNLVHMNSI VHAVLSTVSV VLYFCFFVMG FGPAPNILCS EIFPTRVRGI CIAICALTFW ICDIIVTYSL PVLLKSIGLA GVFGMYAIVC
701: CISWVFVFIK VPETKGMPLE VITEFFSVGA RQAEAAKNE

Arabidopsis Description

TMT2TMT2 [Source:UniProtKB/TrEMBL;Acc:A0A178V1T0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.