CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002596.1-P	Field mustard	plastid	99.82	99.82
CDY54245	Canola	plastid	96.76	96.06
AT5G59250.1	Thale cress	plastid	90.99	90.5
VIT_06s0004g05190.t01	Wine grape	golgi, mitochondrion, plasma membrane, plastid	72.43	79.29
Os03t0823100-01	Rice	plasma membrane	40.72	74.59
PGSC0003DMT400026885	Potato	plasma membrane	72.97	74.31
Solyc03g078000.2.1	Tomato	plastid	72.79	74.13
KRH29747	Soybean	plastid	72.43	72.83
KRH24741	Soybean	plastid	71.89	71.25
GSMUA_Achr10P...	Banana	plastid	68.47	68.22
EER90617	Sorghum	plastid	65.95	64.78
TraesCS5A01G484700.1	Wheat	plastid	65.23	63.84
TraesCS5D01G498200.1	Wheat	plastid	64.86	63.72
HORVU5Hr1G114020.2	Barley	plastid	65.59	63.53
TraesCS5B01G498000.2	Wheat	mitochondrion, plastid	64.32	63.19
Os03t0823200-01	Rice	extracellular, mitochondrion, plasma membrane	12.25	62.96
CDY38076	Canola	cytosol, plasma membrane, vacuole	53.33	58.96
Zm00001d012938_P002	Maize	plastid	65.59	58.62
CDX85478	Canola	plasma membrane	53.33	58.61
CDY28736	Canola	cytosol, plasma membrane, vacuole	52.25	57.65
CDY23466	Canola	plasma membrane	52.07	57.46
CDY49922	Canola	plasma membrane	51.89	57.26
CDX92030	Canola	plasma membrane	51.71	57.17
CDY43152	Canola	cytosol, plasma membrane, vacuole	51.71	56.94
CDX74227	Canola	cytosol, plasma membrane, vacuole	48.65	55.9
CDX92028	Canola	cytosol, mitochondrion, peroxisome, vacuole	46.85	54.17
CDY47336	Canola	golgi, plasma membrane	20.0	42.53
CDY33275	Canola	extracellular, golgi, vacuole	8.11	37.82
CDY65623	Canola	plasma membrane	28.29	23.26
CDY31497	Canola	plasma membrane	26.31	23.1
CDX69128	Canola	plasma membrane	28.29	22.99
CDY29502	Canola	plasma membrane	26.49	22.31
CDY33276	Canola	plasma membrane	25.95	21.56
CDX75492	Canola	plasma membrane	28.47	21.35
CDY16303	Canola	plasma membrane	25.77	21.34
CDX78009	Canola	plasma membrane	25.59	21.23
CDX73717	Canola	plasma membrane	25.77	21.0
CDY33650	Canola	plasma membrane	26.13	20.8
CDX96618	Canola	plasma membrane	26.13	20.0

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.1.2	GO:A0A078H561	UniProt:A0A078H561	EnsemblPlants:CDY33006	ProteinID:CDY33006
ProteinID:CDY33006.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00053228001	InterPro:IPR020846
InterPro:MFS_dom	InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf	PFAM:PF00083	PRINTS:PR00171	ScanProsite:PS00217
PFscan:PS50850	PANTHER:PTHR23500	PANTHER:PTHR23500:SF159	SUPFAM:SSF103473	InterPro:Sugar/inositol_transpt	InterPro:Sugar_transporter_CS
TIGRFAMs:TIGR00879	TMHMM:TMhelix	UniParc:UPI0004EE4B60	SEG:seg	:	:

Description

BnaA10g12120DBnaA10g12120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H561]

Coordinates

chrLK032304:-:208997..211856

Molecular Weight (calculated)

59208.1 Da

IEP (calculated)

9.126

GRAVY (calculated)

0.544

Length

555 amino acids

Sequence
(BLAST)

001: MAFAISTQSH FAIRPLQLNQ FKNSCPRAFL GSCFKPRPDS SYLRSKELPK LGLVPRHRQK FQVGVGTGGE LADSGEVADS VASDAPESFS WSSVILPFIF
101: PALGGLLFGY DIGATSGATL SLQSATLSGT TWFNLSPVQL GLVVSGSLYG ALLGSTLVYG IADFLGRRRE LIIASGLYLL GSLITGCAPD LNVLLLGRLL
201: YGLGIGLAMH GAPLYIAETC PSQIRGTLIS LKELFIVLGI LLGFSVGSFE IDVVGGWRYM YGFGTPVALL MGLGMWSLPP SPRWLLLRAV QGKGALQEYK
301: DKAMVALSKL RGRPPGDKLS EKLVDDALLS VKTAYEDEEK SGGNFLEVFQ GPNLKALTIG GGLVLFQQIT GQPSVLYYAG SILQTAGFSA AADATRVSVI
401: IGVFKLLMTW VAVAKVDDLG RRPLLIGGVS GIAISLFLLS AYYKFLGGFP LVAVGALLLY VGCYQISFGP ISWLMVSEIF PLRTRGRGIS LAVLTNFGSN
501: AIVTFAFSPL KEYLGAENLF LLFGAIALVS LLFVVLVVPE TKGLSLEEIE SKILK

Best Arabidopsis Sequence Match ( AT5G59250.1 )
(BLAST)

001: MAFAVSVQSH FAIRALKRDH FKNPSPRTFC SCFKSRPDSS YLSLKERTCF VSKPGLVTTR YRHIFQVGAE TGGEFADSGE VADSLASDAP ESFSWSSVIL
101: PFIFPALGGL LFGYDIGATS GATLSLQSPA LSGTTWFNFS PVQLGLVVSG SLYGALLGSI SVYGVADFLG RRRELIIAAV LYLLGSLITG CAPDLNILLV
201: GRLLYGFGIG LAMHGAPLYI AETCPSQIRG TLISLKELFI VLGILLGFSV GSFQIDVVGG WRYMYGFGTP VALLMGLGMW SLPASPRWLL LRAVQGKGQL
301: QEYKEKAMLA LSKLRGRPPG DKISEKLVDD AYLSVKTAYE DEKSGGNFLE VFQGPNLKAL TIGGGLVLFQ QITGQPSVLY YAGSILQTAG FSAAADATRV
401: SVIIGVFKLL MTWVAVAKVD DLGRRPLLIG GVSGIALSLF LLSAYYKFLG GFPLVAVGAL LLYVGCYQIS FGPISWLMVS EIFPLRTRGR GISLAVLTNF
501: GSNAIVTFAF SPLKEFLGAE NLFLLFGGIA LVSLLFVILV VPETKGLSLE EIESKILK

Arabidopsis Description

D-xylose-proton symporter-like 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WWW9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.