CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
plasma membrane 5
endoplasmic reticulum 2
vacuole 2
golgi 2
extracellular 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29502	Canola	plasma membrane	99.21	95.14
Bra025848.1-P	Field mustard	plasma membrane	99.53	87.24
CDY33650	Canola	plasma membrane	89.56	81.21
CDX96618	Canola	plasma membrane	92.41	80.55
AT1G20840.2	Thale cress	golgi, plasma membrane	91.3	78.61
CDY33275	Canola	extracellular, golgi, vacuole	12.97	68.91
KRH60881	Soybean	endoplasmic reticulum	70.41	60.3
KRH51563	Soybean	endoplasmic reticulum	70.09	60.11
CDY65623	Canola	plasma membrane	63.92	59.85
CDX69128	Canola	plasma membrane	63.77	59.0
VIT_18s0122g00850.t01	Wine grape	plasma membrane	68.04	58.11
PGSC0003DMT400025886	Potato	plasma membrane	67.09	57.53
Solyc04g082700.2.1	Tomato	endoplasmic reticulum	67.09	57.45
CDX75492	Canola	plasma membrane	65.98	56.35
CDY33276	Canola	plasma membrane	56.96	53.89
CDY16303	Canola	plasma membrane	56.96	53.73
CDX78009	Canola	plasma membrane	56.49	53.36
CDX73717	Canola	plasma membrane	56.49	52.42
CDY38076	Canola	cytosol, plasma membrane, vacuole	22.15	27.89
CDX85478	Canola	plasma membrane	21.99	27.52
CDY43152	Canola	cytosol, plasma membrane, vacuole	21.84	27.38
CDY28736	Canola	cytosol, plasma membrane, vacuole	21.68	27.24
CDX92030	Canola	plasma membrane	21.2	26.69
CDY49922	Canola	plasma membrane	21.04	26.44
CDY23466	Canola	plasma membrane	21.04	26.44
CDY33006	Canola	plastid	23.1	26.31
CDX74227	Canola	cytosol, plasma membrane, vacuole	20.09	26.29
CDY54245	Canola	plastid	22.94	25.94
CDX92028	Canola	cytosol, mitochondrion, peroxisome, vacuole	19.15	25.21
CDY47336	Canola	golgi, plasma membrane	8.7	21.07

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.1.4	GO:A0A078H1Y0	UniProt:A0A078H1Y0	EnsemblPlants:CDY31497	ProteinID:CDY31497
ProteinID:CDY31497.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00047788001	InterPro:IPR020846
InterPro:MFS_dom	InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf	PFAM:PF00083	PRINTS:PR00171	ScanProsite:PS00216
ScanProsite:PS00217	PFscan:PS50850	PANTHER:PTHR23500	PANTHER:PTHR23500:SF180	SUPFAM:SSF103473	InterPro:Sugar/inositol_transpt
InterPro:Sugar_transporter_CS	TMHMM:TMhelix	UniParc:UPI0004EEAC36	SEG:seg	:	:

Description

BnaC05g16060DBnaC05g16060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1Y0]

Coordinates

chrLK032273:-:328571..332300

Molecular Weight (calculated)

68009.4 Da

IEP (calculated)

4.962

GRAVY (calculated)

0.486

Length

632 amino acids

Sequence
(BLAST)

001: MKGATLVALA ATIGNFLQGW DNATIAGAMV YINKDMNLAT SVQGLVVAMS LIGATVITTC SGPISDWLGR RPMLILASVM YFLSGLIMLW SPNVYVLCLA
101: RLLDGFGAGL AVTLVPVYIS ETAPPEIRGQ LNTLPQFLGS GGMFLSYCMV FTMSLSDAPS WRAMLGVLSI PSLVYLLFTV FYLPESPRWL VSKGRMDEAK
201: KVLQMLCGRE DVTDEMALLV EGLDIGGEKT LEDLLVTLEE HETLETNQSY IARPVTDQQQ SSLGLRSRHG SLANQSGIHK DPIVGLFDSL HEKMPEAGGN
301: TKSGIFGSIQ FNKDHDDYAT DDNAPDDDSD NDLRSPLIMR RHSTLNDGAE SRRGSIVSLP GGHDGGSYVH ASALVSRSVL GPKSVHGSDV APPTGPLWSA
401: LLEPGVKRAL VVGVGIQILQ QFSGINGVLY YTPQILERAG VDILLSSFGL SSISASFLIS GLTTLLMLPA IVVAMRLMDV SGRRALLLWT IPVLIVSLVA
501: LFISELVQIS KVVNAALSTV CVVLYICFFV MGYGPIPNIL CSEIFPTRVR GLCIAICAMV FWICDIIVTY SLPVLLSSIG LVGVFSIYAA VCVISWVFVY
601: LKVPETKGMP LEVITDYFAF GAQASAPSKD DT

Best Arabidopsis Sequence Match ( AT1G20840.1 )
(BLAST)

001: MKGATLVALA ATIGNFLQGW DNATIAGAMV YINKDLNLPT SVQGLVVAMS LIGATVITTC SGPISDWLGR RPMLILSSVM YFVCGLIMLW SPNVYVLCFA
101: RLLNGFGAGL AVTLVPVYIS ETAPPEIRGQ LNTLPQFLGS GGMFLSYCMV FTMSLSDSPS WRAMLGVLSI PSLLYLFLTV FYLPESPRWL VSKGRMDEAK
201: RVLQQLCGRE DVTDEMALLV EGLDIGGEKT MEDLLVTLED HEGDDTLETV DEDGQMRLYG THENQSYLAR PVPEQNSSLG LRSRHGSLAN QSMILKDPLV
301: NLFGSLHEKM PEAGGNTRSG IFPHFGSMFS TTADAPHGKP AHWEKDIESH YNKDNDDYAT DDGAGDDDDS DNDLRSPLMS RQTTSMDKDM IPHPTSGSTL
401: SMRRHSTLMQ GNGESSMGIG GGWHMGYRYE NDEYKRYYLK EDGAESRRGS IISIPGGPDG GGSYIHASAL VSRSVLGPKS VHGSAMVPPE KIAASGPLWS
501: ALLEPGVKRA LVVGVGIQIL QQFSGINGVL YYTPQILERA GVDILLSSLG LSSISASFLI SGLTTLLMLP AIVVAMRLMD VSGRRSLLLW TIPVLIVSLV
601: VLVISELIHI SKVVNAALST GCVVLYFCFF VMGYGPIPNI LCSEIFPTRV RGLCIAICAM VFWIGDIIVT YSLPVLLSSI GLVGVFSIYA AVCVISWIFV
701: YMKVPETKGM PLEVITDYFA FGAQAQASAP SKDI

Arabidopsis Description

MSSP1TMT1 [Source:UniProtKB/TrEMBL;Acc:A0A178W059]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.