Factsheet for AT1G20840.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
mitochondrion 1
golgi 3
endoplasmic reticulum 2
vacuole 2
extracellular 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33650	Canola	plasma membrane	87.33	91.97
Bra016448.1-P	Field mustard	plasma membrane	90.87	91.87
CDX96618	Canola	plasma membrane	90.74	91.86
CDY31497	Canola	plasma membrane	78.61	91.3
CDY29502	Canola	plasma membrane	81.74	91.05
Bra025848.1-P	Field mustard	plasma membrane	88.96	90.57
KRH51563	Soybean	endoplasmic reticulum	67.57	67.3
KRH60881	Soybean	endoplasmic reticulum	67.57	67.21
VIT_18s0122g00850.t01	Wine grape	plasma membrane	65.4	64.86
PGSC0003DMT400025886	Potato	plasma membrane	64.03	63.77
Solyc04g082700.2.1	Tomato	endoplasmic reticulum	63.49	63.14
AT4G35300.7	Thale cress	plasma membrane	63.49	63.06
AT3G51490.2	Thale cress	plasma membrane	55.99	55.77
AT5G17010.4	Thale cress	plasma membrane	18.66	27.24
AT3G03090.1	Thale cress	plasma membrane	17.57	25.65
AT5G59250.1	Thale cress	plastid	19.21	25.27

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.1.4	EntrezGene:838676	UniProt:A0A178W059	ProteinID:AAD30608.1	ProteinID:AAF80627.1
ProteinID:AEE30030.1	ProteinID:ANM60885.1	ArrayExpress:AT1G20840	EnsemblPlantsGene:AT1G20840	RefSeq:AT1G20840	TAIR:AT1G20840
RefSeq:AT1G20840-TAIR-G	EnsemblPlants:AT1G20840.2	Unigene:At.24866	GO:GO:0003674	GO:GO:0005215	GO:GO:0005351
GO:GO:0005355	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0006810	GO:GO:0008150	GO:GO:0008643	GO:GO:0009605	GO:GO:0009607
GO:GO:0009624	GO:GO:0009705	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857
GO:GO:0035428	GO:GO:0046323	GO:GO:0055085	GO:GO:1902600	GO:GO:1904659	InterPro:IPR020846
InterPro:MFS_dom	InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf	RefSeq:NP_001319055.1	RefSeq:NP_173508.1	ProteinID:OAP11950.1
PFAM:PF00083	PRINTS:PR00171	ScanProsite:PS00216	ScanProsite:PS00217	PFscan:PS50850	PANTHER:PTHR23500
PANTHER:PTHR23500:SF180	UniProt:Q96290	SUPFAM:SSF103473	InterPro:Sugar/inositol_transpt	InterPro:Sugar_transporter_CS	Symbol:TMT1
TMHMM:TMhelix	UniParc:UPI0000048298	EMBL:Z50752	SEG:seg	:	:

Description

MSSP1TMT1 [Source:UniProtKB/TrEMBL;Acc:A0A178W059]

Coordinates

chr1:-:7244939..7248494

Molecular Weight (calculated)

79489.8 Da

IEP (calculated)

5.065

GRAVY (calculated)

0.259

Length

734 amino acids

Sequence
(BLAST)

001: MKGATLVALA ATIGNFLQGW DNATIAGAMV YINKDLNLPT SVQGLVVAMS LIGATVITTC SGPISDWLGR RPMLILSSVM YFVCGLIMLW SPNVYVLCFA
101: RLLNGFGAGL AVTLVPVYIS ETAPPEIRGQ LNTLPQFLGS GGMFLSYCMV FTMSLSDSPS WRAMLGVLSI PSLLYLFLTV FYLPESPRWL VSKGRMDEAK
201: RVLQQLCGRE DVTDEMALLV EGLDIGGEKT MEDLLVTLED HEGDDTLETV DEDGQMRLYG THENQSYLAR PVPEQNSSLG LRSRHGSLAN QSMILKDPLV
301: NLFGSLHEKM PEAGGNTRSG IFPHFGSMFS TTADAPHGKP AHWEKDIESH YNKDNDDYAT DDGAGDDDDS DNDLRSPLMS RQTTSMDKDM IPHPTSGSTL
401: SMRRHSTLMQ GNGESSMGIG GGWHMGYRYE NDEYKRYYLK EDGAESRRGS IISIPGGPDG GGSYIHASAL VSRSVLGPKS VHGSAMVPPE KIAASGPLWS
501: ALLEPGVKRA LVVGVGIQIL QQFSGINGVL YYTPQILERA GVDILLSSLG LSSISASFLI SGLTTLLMLP AIVVAMRLMD VSGRRSLLLW TIPVLIVSLV
601: VLVISELIHI SKVVNAALST GCVVLYFCFF VMGYGPIPNI LCSEIFPTRV RGLCIAICAM VFWIGDIIVT YSLPVLLSSI GLVGVFSIYA AVCVISWIFV
701: YMKVPETKGM PLEVITDYFA FGAQAQASAP SKDI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.