CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
mitochondrion 1
golgi 3
plasma membrane 5
endoplasmic reticulum 2
vacuole 2
extracellular 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51563	Soybean	endoplasmic reticulum	98.37	98.51
VIT_18s0122g00850.t01	Wine grape	plasma membrane	79.4	79.19
PGSC0003DMT400025886	Potato	plasma membrane	76.69	76.8
Solyc04g082700.2.1	Tomato	endoplasmic reticulum	76.69	76.69
KRH14010	Soybean	plasma membrane	68.97	75.97
KRH74104	Soybean	plasma membrane	72.36	75.11
KRH60612	Soybean	plasma membrane	74.12	74.52
KRH51319	Soybean	nucleus, plasma membrane	74.39	74.39
CDY31497	Canola	plasma membrane	60.3	70.41
CDY29502	Canola	plasma membrane	62.06	69.5
CDY33650	Canola	plasma membrane	64.36	68.15
AT1G20840.2	Thale cress	golgi, plasma membrane	67.21	67.57
CDX96618	Canola	plasma membrane	66.26	67.45
Bra025848.1-P	Field mustard	plasma membrane	65.72	67.27
Bra016448.1-P	Field mustard	plasma membrane	66.12	67.22
KRH28946	Soybean	plasma membrane	52.17	53.32
KRH07812	Soybean	plasma membrane	49.19	52.99
KRH76516	Soybean	plasma membrane	52.98	52.55
KRH24040	Soybean	plasma membrane	19.78	29.38
KRH29016	Soybean	plasma membrane	19.78	29.14
KRH29747	Soybean	plastid	19.65	26.27
KRH24741	Soybean	plastid	19.92	26.25

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:100791976	MapMan:24.2.2.1.4	EMBL:ACUP02002142	ncoils:Coil	EnsemblPlantsGene:GLYMA_04G015000
GO:GO:0003674	GO:GO:0005215	GO:GO:0005351	GO:GO:0005355	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0035428
GO:GO:0046323	GO:GO:0055085	GO:GO:1902600	GO:GO:1904659	UniProt:I1JSR9	InterPro:IPR020846
EnsemblPlants:KRH60881	ProteinID:KRH60881	ProteinID:KRH60881.1	InterPro:MFS_dom	InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf
PFAM:PF00083	PRINTS:PR00171	ScanProsite:PS00216	ScanProsite:PS00217	PFscan:PS50850	PANTHER:PTHR23500
PANTHER:PTHR23500:SF180	SUPFAM:SSF103473	InterPro:Sugar/inositol_transpt	InterPro:Sugar_transporter_CS	TMHMM:TMhelix	UniParc:UPI000233A392
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:1148832..1154069

Molecular Weight (calculated)

78752.3 Da

IEP (calculated)

5.488

GRAVY (calculated)

0.364

Length

738 amino acids

Sequence
(BLAST)

001: MKGAVLVAIA ASIGNFLQGW DNATIAGAIV YIKKDLALQT TMEGLVVAMS LIGATVITTC SGPIADWLGR RPMMIISSVL YFLGGLVMLW SPNVYVLCLA
101: RLLDGFGIGL AVTLVPVYIS ETAPSEIRGS LNTLPQFSGS GGMFLSYCMV FGMSLSPAPS WRLMLGVLSI PSLLYFALTI FFLPESPRWL VSKGRMLEAK
201: KVLQRLRGRE DVSGEMALLV EGLGIGGDTS IEEYIIGPAD EVADGHEHAT EKDKIRLYGS QAGLSWLAKP VTGQSSIGLA SRHGSIINQS MPLMDPLVTL
301: FGSIHEKLPE TGAGGSMRST LFPNFGSMFS TAEPHAKNEQ WDEESLQREG EDYMSDAAGG DSDDNLHSPL ISRQTTSLEK DLPPPPPSHG SILGSMRRHS
401: SLMQGSGEQG GSTGIGGGWQ LAWKWTDKGE DGKQQGGFKR IYLHEEGVSA SRRGSIVSIP GEGEFVQAAA LVSQPALYSK ELIDGHPVGP AMVHPSETAS
501: KGPSWKALLE PGVKHALVVG VGIQILQQFS GINGVLYYTP QILEEAGVEV LLSDIGIGSE SASFLISAFT TFLMLPCIGV AMKLMDVSGR RQLLLTTIPV
601: LIGSLIILVI GSLVNFGNVA HAAISTVCVV VYFCCFVMGY GPIPNILCSE IFPTRVRGLC IAICALVFWI GDIIITYSLP VMLGSLGLGG VFAIYAVVCF
701: ISWIFVFLKV PETKGMPLEV ISEFFSVGAK QAASAKNE

Best Arabidopsis Sequence Match ( AT4G35300.4 )
(BLAST)

001: MSGAVLVAIA AAVGNLLQGW DNATIAGAVL YIKKEFNLES NPSVEGLIVA MSLIGATLIT TCSGGVADWL GRRPMLILSS ILYFVGSLVM LWSPNVYVLL
101: LGRLLDGFGV GLVVTLVPIY ISETAPPEIR GLLNTLPQFT GSGGMFLSYC MVFGMSLMPS PSWRLMLGVL FIPSLVFFFL TVFFLPESPR WLVSKGRMLE
201: AKRVLQRLRG REDVSGEMAL LVEGLGIGGE TTIEEYIIGP ADEVTDDHDI AVDKDQIKLY GAEEGLSWVA RPVKGGSTMS VLSRHGSTMS RRQGSLIDPL
301: VTLFGSVHEK MPDTGSMRSA LFPHFGSMFS VGGNQPRHED WDEENLVGEG EDYPSDHGDD SEDDLHSPLI SRQTTSMEKD MPHTAHGTLS TFRHGSQVQG
401: AQGEGAGSMG IGGGWQVAWK WTEREDESGQ KEGGFKRIYL HQEGFPGSRR GSIVSLPGGD GTGEADFVQA SALVSQPALY SKDLLKEHTI GPAMVHPSET
501: TKGSIWHDLH DPGVKRALVV GVGLQILQQF SGINGVLYYT PQILEQAGVG ILLSNMGISS SSASLLISAL TTFVMLPAIA VAMRLMDLSG RRTLLLTTIP
601: ILIASLLVLV ISNLVHMNSI VHAVLSTVSV VLYFCFFVMG FGPAPNILCS EIFPTRVRGI CIAICALTFW ICDIIVTYSL PVLLKSIGLA GVFGMYAIVC
701: CISWVFVFIK VPETKGMPLE VITEFFSVGA RQAEAAKNE

Arabidopsis Description

TMT2TMT2 [Source:UniProtKB/TrEMBL;Acc:A0A178V1T0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.