CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29747	Soybean	plastid	94.46	95.83
VIT_06s0004g05190.t01	Wine grape	golgi, mitochondrion, plasma membrane, plastid	73.93	81.66
Solyc03g078000.2.1	Tomato	plastid	71.79	73.76
PGSC0003DMT400026885	Potato	plasma membrane	71.61	73.58
Os03t0823100-01	Rice	plasma membrane	39.11	72.28
CDY54245	Canola	plastid	71.96	72.09
Bra002596.1-P	Field mustard	plastid	71.43	72.07
CDY33006	Canola	plastid	71.25	71.89
AT5G59250.1	Thale cress	plastid	70.89	71.15
GSMUA_Achr10P...	Banana	plastid	69.46	69.84
EER90617	Sorghum	plastid	64.29	63.72
KRH29016	Soybean	plasma membrane	55.71	62.28
KRH24040	Soybean	plasma membrane	54.64	61.57
TraesCS5D01G498200.1	Wheat	plastid	61.61	61.06
TraesCS5A01G484700.1	Wheat	plastid	61.79	61.02
TraesCS5B01G498000.2	Wheat	mitochondrion, plastid	61.07	60.53
HORVU5Hr1G114020.2	Barley	plastid	61.61	60.21
Os03t0823200-01	Rice	extracellular, mitochondrion, plasma membrane	11.61	60.19
Zm00001d012938_P002	Maize	plastid	63.39	57.17
KRH14010	Soybean	plasma membrane	24.64	20.6
KRH74104	Soybean	plasma membrane	26.07	20.53
KRH07812	Soybean	plasma membrane	24.82	20.29
KRH51319	Soybean	nucleus, plasma membrane	26.43	20.05
KRH51563	Soybean	endoplasmic reticulum	26.25	19.95
KRH60881	Soybean	endoplasmic reticulum	26.25	19.92
KRH60612	Soybean	plasma membrane	26.07	19.89
KRH28946	Soybean	plasma membrane	24.82	19.25
KRH76516	Soybean	plasma membrane	25.18	18.95

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:100809316	MapMan:24.2.2.1.2	EMBL:ACUP02007184	EnsemblPlantsGene:GLYMA_12G059900	GO:GO:0003674
GO:GO:0005215	GO:GO:0005351	GO:GO:0005355	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0035428	GO:GO:0046323
GO:GO:0055085	GO:GO:1902600	GO:GO:1904659	UniProt:I1LQM5	InterPro:IPR020846	EnsemblPlants:KRH24741
ProteinID:KRH24741	ProteinID:KRH24741.1	ProteinID:KRH24742.1	InterPro:MFS_dom	InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf
PFAM:PF00083	PRINTS:PR00171	ScanProsite:PS00216	ScanProsite:PS00217	PFscan:PS50850	PANTHER:PTHR23500
PANTHER:PTHR23500:SF159	SUPFAM:SSF103473	InterPro:Sugar/inositol_transpt	InterPro:Sugar_transporter_CS	TIGRFAMs:TIGR00879	TMHMM:TMhelix
UniParc:UPI000233CD13	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:4331347..4335487

Molecular Weight (calculated)

60481.5 Da

IEP (calculated)

9.556

GRAVY (calculated)

0.507

Length

560 amino acids

Sequence
(BLAST)

001: MASTSLFNFR LPLFNFNPLH HRRIKRPKSL LSSPRNSPRL VSSINDHLAL TRVTYPLLQS HSAPKRRFHV GVQKEYSDGE SSESIVSDAT YQEEFSWSSV
101: VLPFLFPALG GLLFGYDIGA TSGATISLQS PELSGISWFN LSAIQLGLVV SGSLYGALLG SLVAFAIADF LGRKKQLITA ALLYLFGGVI TAYAPELGVL
201: LAGRLIYGLG IGLAMHGAPL YIAETCPSQI RGTLVSLKEL FIVLGILLGY FVGSFLIETV GGWRFMYGFS APVAVLMGLG MWTLPNSPRW LLLRAVQGKG
301: SFQDLKEQAI ASLSKLRGRP PGDKESEKQI EETLVSLKSV YADQESEGNF LEVFQGPNLK AFIIGGGLVL FQQITGQPSV LYYAGPILQS AGFSAASDAT
401: KVSVVIGLFK LLMTWIAVLK VDDLGRRPLL IGGVSGIALS LVLLSAYYKF LGGFPLVAVG ALLLYVGCYQ ISFGPISWLM VSEVFPLRTR GKGISLAVLT
501: NFASNAVVTF AFSPLKEFLG AENLFLLFGA IATLSLLFII FSVPETKGMS LEDIESKILK

Best Arabidopsis Sequence Match ( AT5G59250.1 )
(BLAST)

001: MAFAVSVQSH FAIRALKRDH FKNPSPRTFC SCFKSRPDSS YLSLKERTCF VSKPGLVTTR YRHIFQVGAE TGGEFADSGE VADSLASDAP ESFSWSSVIL
101: PFIFPALGGL LFGYDIGATS GATLSLQSPA LSGTTWFNFS PVQLGLVVSG SLYGALLGSI SVYGVADFLG RRRELIIAAV LYLLGSLITG CAPDLNILLV
201: GRLLYGFGIG LAMHGAPLYI AETCPSQIRG TLISLKELFI VLGILLGFSV GSFQIDVVGG WRYMYGFGTP VALLMGLGMW SLPASPRWLL LRAVQGKGQL
301: QEYKEKAMLA LSKLRGRPPG DKISEKLVDD AYLSVKTAYE DEKSGGNFLE VFQGPNLKAL TIGGGLVLFQ QITGQPSVLY YAGSILQTAG FSAAADATRV
401: SVIIGVFKLL MTWVAVAKVD DLGRRPLLIG GVSGIALSLF LLSAYYKFLG GFPLVAVGAL LLYVGCYQIS FGPISWLMVS EIFPLRTRGR GISLAVLTNF
501: GSNAIVTFAF SPLKEFLGAE NLFLLFGGIA LVSLLFVILV VPETKGLSLE EIESKILK

Arabidopsis Description

D-xylose-proton symporter-like 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WWW9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.