Factsheet for Zm00001d012938_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 1
plasma membrane 3
vacuole 1
golgi 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90617	Sorghum	plastid	83.25	91.5
Os03t0823100-01	Rice	plasma membrane	42.51	87.13
Os03t0823200-01	Rice	extracellular, mitochondrion, plasma membrane	13.2	75.93
TraesCS5D01G498200.1	Wheat	plastid	66.83	73.45
TraesCS5A01G484700.1	Wheat	plastid	66.83	73.19
HORVU5Hr1G114020.2	Barley	plastid	67.47	73.12
TraesCS5B01G498000.2	Wheat	mitochondrion, plastid	66.18	72.74
VIT_06s0004g05190.t01	Wine grape	golgi, mitochondrion, plasma membrane, plastid	58.62	71.79
GSMUA_Achr10P...	Banana	plastid	61.51	68.58
Solyc03g078000.2.1	Tomato	plastid	57.81	65.87
PGSC0003DMT400026885	Potato	plasma membrane	57.81	65.87
Bra002596.1-P	Field mustard	plastid	58.78	65.77
CDY33006	Canola	plastid	58.62	65.59
CDY54245	Canola	plastid	58.78	65.3
KRH29747	Soybean	plastid	57.65	64.86
AT5G59250.1	Thale cress	plastid	57.97	64.52
KRH24741	Soybean	plastid	57.17	63.39
Zm00001d014435_P004	Maize	plasma membrane	47.5	54.43
Zm00001d029762_P004	Maize	golgi, plasma membrane, vacuole	23.19	19.28
Zm00001d016274_P011	Maize	plasma membrane	22.87	19.06
Zm00001d014872_P001	Maize	plasma membrane	22.06	17.96
Zm00001d048823_P007	Maize	plasma membrane	18.04	17.18

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.1.2	UniProt:A0A1D6GE24	ProteinID:AQK61870.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846	InterPro:MFS_dom	InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf
PFAM:PF00083	PRINTS:PR00171	ScanProsite:PS00217	PFscan:PS50850	PANTHER:PTHR23500	PANTHER:PTHR23500:SF159
SUPFAM:SSF103473	InterPro:Sugar/inositol_transpt	InterPro:Sugar_transporter_CS	TIGRFAMs:TIGR00879	TMHMM:TMhelix	UniParc:UPI00084251AF
EnsemblPlantsGene:Zm00001d012938	EnsemblPlants:Zm00001d012938_P002	EnsemblPlants:Zm00001d012938_T002	SEG:seg	:	:

Description

D-xylose-proton symporter-like 3 chloroplastic

Coordinates

chr5:-:2230365..2235259

Molecular Weight (calculated)

65908.6 Da

IEP (calculated)

10.789

GRAVY (calculated)

0.466

Length

621 amino acids

Sequence
(BLAST)

001: MATIGLVPST VVASTAIRAP APAALTRASN RQPPHARRLL DLGRRAPAMD ALRVSGAAEP LLRPAAAGGH PRLRVRRPTD PPVPPRLNIA LAHPCYSGGG
101: TRRLSLVVKG LTRWRMCRCG PVRSRAMAAP RRRGTPRSRG RPSSSRKPVS LQLSALMDHC SEPRFLFPAL GGLLFGYDIG ATSGATISVQ SPDLSGTDWF
201: SLSSLQLGLV ASGSLYGALG GSLLAYRIAD FLGRRIELVT AAALYILGAL VTGFAPNFVA LIIGRVLYGI GIGLAMHGAP LYIAETSPSQ IRGTLISLKE
301: LFIVLGILLG YLVGSLEIDN VGGWRYMFGF SAPLAAIMAI GMWTLPSSPR WLLLRAVQGK ASLEDNKKKA IQALRTLRGR TASEKVLADD VDDTIVSIKA
401: AYAGQEAEGN VWDVFEGASL KAFTIGGGLV LFQQITGQPS VLYYAASILQ TAGFSAASDA AKVAILIGLF KLLMTGVAVF KVDDVGRRPL LIGGVGGIAL
501: SLFLLAAYYK ILNNFPFVAV GALLLYVGAY QVSFGPISWL MVSEIFPLRT RGRGISLAVL TNFGSNALVT FAFSPLKELL GPANIFFLFG VIAVLSLVFV
601: ILVVPETKGL SLEEIESKIL K

Best Arabidopsis Sequence Match ( AT5G59250.1 )
(BLAST)

001: MAFAVSVQSH FAIRALKRDH FKNPSPRTFC SCFKSRPDSS YLSLKERTCF VSKPGLVTTR YRHIFQVGAE TGGEFADSGE VADSLASDAP ESFSWSSVIL
101: PFIFPALGGL LFGYDIGATS GATLSLQSPA LSGTTWFNFS PVQLGLVVSG SLYGALLGSI SVYGVADFLG RRRELIIAAV LYLLGSLITG CAPDLNILLV
201: GRLLYGFGIG LAMHGAPLYI AETCPSQIRG TLISLKELFI VLGILLGFSV GSFQIDVVGG WRYMYGFGTP VALLMGLGMW SLPASPRWLL LRAVQGKGQL
301: QEYKEKAMLA LSKLRGRPPG DKISEKLVDD AYLSVKTAYE DEKSGGNFLE VFQGPNLKAL TIGGGLVLFQ QITGQPSVLY YAGSILQTAG FSAAADATRV
401: SVIIGVFKLL MTWVAVAKVD DLGRRPLLIG GVSGIALSLF LLSAYYKFLG GFPLVAVGAL LLYVGCYQIS FGPISWLMVS EIFPLRTRGR GISLAVLTNF
501: GSNAIVTFAF SPLKEFLGAE NLFLLFGGIA LVSLLFVILV VPETKGLSLE EIESKILK

Arabidopsis Description

D-xylose-proton symporter-like 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WWW9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.