Factsheet for Solyc03g078000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026885	Potato	plasma membrane	97.25	97.25
VIT_06s0004g05190.t01	Wine grape	golgi, mitochondrion, plasma membrane, plastid	73.21	78.7
Os03t0823100-01	Rice	plasma membrane	40.73	73.27
Bra002596.1-P	Field mustard	plastid	74.31	72.97
CDY54245	Canola	plastid	74.68	72.81
CDY33006	Canola	plastid	74.13	72.79
KRH29747	Soybean	plastid	73.39	72.46
KRH24741	Soybean	plastid	73.76	71.79
AT5G59250.1	Thale cress	plastid	73.03	71.33
GSMUA_Achr10P...	Banana	plastid	69.72	68.22
EER90617	Sorghum	plastid	66.06	63.72
TraesCS5D01G498200.1	Wheat	plastid	63.49	61.24
TraesCS5A01G484700.1	Wheat	plastid	63.49	61.02
HORVU5Hr1G114020.2	Barley	plastid	64.04	60.91
TraesCS5B01G498000.2	Wheat	mitochondrion, plastid	63.12	60.88
Solyc03g096950.2.1	Tomato	plasma membrane	56.15	60.84
Zm00001d012938_P002	Maize	plastid	65.87	57.81
Os03t0823200-01	Rice	extracellular, mitochondrion, plasma membrane	11.38	57.41
Solyc03g032040.2.1	Tomato	plasma membrane	26.79	20.14
Solyc02g082410.2.1	Tomato	plasma membrane	26.05	20.08
Solyc04g082700.2.1	Tomato	endoplasmic reticulum	26.24	19.38

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.1.2	EMBL:AB845667	ncoils:Coil	GO:GO:0003674	GO:GO:0005215
GO:GO:0005351	GO:GO:0005355	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0008643
GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0035428	GO:GO:0046323
GO:GO:0055085	GO:GO:1902600	GO:GO:1904659	InterPro:IPR020846	UniProt:K4BHN0	EMBL:LC015611
InterPro:MFS_dom	InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf	PFAM:PF00083	PRINTS:PR00171	ScanProsite:PS00217
PFscan:PS50850	PANTHER:PTHR23500	PANTHER:PTHR23500:SF159	SUPFAM:SSF103473	EnsemblPlantsGene:Solyc03g078000.2	EnsemblPlants:Solyc03g078000.2.1
InterPro:Sugar/inositol_transpt	InterPro:Sugar_transporter_CS	TIGRFAMs:TIGR00879	TMHMM:TMhelix	UniParc:UPI0002767DB3	SEG:seg

Description

Vacuolar glucose transporter 1 [Source:UniProtKB/TrEMBL;Acc:K4BHN0]

Coordinates

chr3:+:48840499..48845063

Molecular Weight (calculated)

58403.2 Da

IEP (calculated)

9.176

GRAVY (calculated)

0.524

Length

545 amino acids

Sequence
(BLAST)

001: MGWYNPTMTL SKPPLLVPSN SWVLRSKKVT ECRRNYPLIG RKQEKLVGIH FVGRKGMLRL KVSASSGEGE EAESGYIEEF SWSSVILPFF FPALGGLLFG
101: YDIGATSGAT ISLQSPELSG MSWYNLSAVQ LGLVVSGSLY GALIGSILAY PFADFLGRSR ELIIAAILYL AGGSLTACAP GLGALLLGRL VYGLGIGLAM
201: HGAPLYIAET CPSQIRGTLI SLKELAIVLG ILLGYFVGSY EIDVIGGWRY MFGFSAPIAL LMGFGMWTLP PSPRWLLLRA IQGKGPLQEY KQKAIGALSK
301: LRGRPDGDKI SEKQIEDTII SLKTAYTDEE AEGNFLEVLQ GPSLKAFTIG GGLVLFQQIT GQPSVLYYAG SILQSAGFSA AADAARVSVV IGIFKSLMTA
401: VAVLKADDLG RRPLLIGGVS GIALSLFLLS AYYKFLGSYP FVAVSALLLY VGCYQISFGP ISWLMVSEIF PLRTRGKGIS LAVLTNFGSN AIVTFAFSPL
501: KELLGAENLF LLFGVIALLS LVFVVTSVPE TKGLTLEEIE SKILK

Best Arabidopsis Sequence Match ( AT5G59250.1 )
(BLAST)

001: MAFAVSVQSH FAIRALKRDH FKNPSPRTFC SCFKSRPDSS YLSLKERTCF VSKPGLVTTR YRHIFQVGAE TGGEFADSGE VADSLASDAP ESFSWSSVIL
101: PFIFPALGGL LFGYDIGATS GATLSLQSPA LSGTTWFNFS PVQLGLVVSG SLYGALLGSI SVYGVADFLG RRRELIIAAV LYLLGSLITG CAPDLNILLV
201: GRLLYGFGIG LAMHGAPLYI AETCPSQIRG TLISLKELFI VLGILLGFSV GSFQIDVVGG WRYMYGFGTP VALLMGLGMW SLPASPRWLL LRAVQGKGQL
301: QEYKEKAMLA LSKLRGRPPG DKISEKLVDD AYLSVKTAYE DEKSGGNFLE VFQGPNLKAL TIGGGLVLFQ QITGQPSVLY YAGSILQTAG FSAAADATRV
401: SVIIGVFKLL MTWVAVAKVD DLGRRPLLIG GVSGIALSLF LLSAYYKFLG GFPLVAVGAL LLYVGCYQIS FGPISWLMVS EIFPLRTRGR GISLAVLTNF
501: GSNAIVTFAF SPLKEFLGAE NLFLLFGGIA LVSLLFVILV VPETKGLSLE EIESKILK

Arabidopsis Description

D-xylose-proton symporter-like 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WWW9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.