Factsheet for VIT_06s0004g05190.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plasma membrane, plastid, mitochondrion

Predictor Summary:

plastid 2
golgi 1
plasma membrane 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29747	Soybean	plastid	81.26	74.64
KRH24741	Soybean	plastid	81.66	73.93
Os03t0823100-01	Rice	plasma membrane	44.18	73.93
PGSC0003DMT400026885	Potato	plasma membrane	79.09	73.58
Solyc03g078000.2.1	Tomato	plastid	78.7	73.21
Bra002596.1-P	Field mustard	plastid	79.49	72.61
CDY33006	Canola	plastid	79.29	72.43
CDY54245	Canola	plastid	79.68	72.27
AT5G59250.1	Thale cress	plastid	79.09	71.86
GSMUA_Achr10P...	Banana	plastid	76.73	69.84
EER90617	Sorghum	plastid	72.19	64.78
Os03t0823200-01	Rice	extracellular, mitochondrion, plasma membrane	13.61	63.89
TraesCS5D01G498200.1	Wheat	plastid	70.02	62.83
TraesCS5A01G484700.1	Wheat	plastid	70.22	62.79
TraesCS5B01G498000.2	Wheat	mitochondrion, plastid	69.43	62.3
HORVU5Hr1G114020.2	Barley	plastid	70.22	62.13
VIT_16s0039g02170.t01	Wine grape	plasma membrane	60.55	61.4
Zm00001d012938_P002	Maize	plastid	71.79	58.62
VIT_07s0031g02270.t01	Wine grape	plasma membrane	31.16	21.29
VIT_18s0122g00850.t01	Wine grape	plasma membrane	30.37	20.81
VIT_03s0038g03940.t01	Wine grape	plasma membrane	29.78	20.43

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:100251880	wikigene:100251880	MapMan:24.2.2.1.2	ProteinID:ADP37178	ProteinID:ADP37178.1
EMBL:AM480727	ProteinID:CAN83894	ProteinID:CAN83894.1	ProteinID:CBI16087	ProteinID:CBI16087.3	UniProt:D7SKB1
EMBL:FN594951	GO:GO:0003674	GO:GO:0005215	GO:GO:0005351	GO:GO:0005355	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0008643
GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0035428	GO:GO:0046323	GO:GO:0055085	GO:GO:1902600	GO:GO:1904659
EMBL:HQ323313	InterPro:IPR020846	InterPro:MFS_dom	InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf	PFAM:PF00083
PRINTS:PR00171	ScanProsite:PS00217	PFscan:PS50850	PANTHER:PTHR23500	PANTHER:PTHR23500:SF159	SUPFAM:SSF103473
InterPro:Sugar/inositol_transpt	InterPro:Sugar_transporter_CS	TIGRFAMs:TIGR00879	TMHMM:TMhelix	UniParc:UPI0001BE0DEB	EntrezGene:VGT2
wikigene:VGT2	ArrayExpress:VIT_06s0004g05190	EnsemblPlantsGene:VIT_06s0004g05190	EnsemblPlants:VIT_06s0004g05190.t01	RefSeq:XP_002280634	RefSeq:XP_002280634.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:6110391..6114619

Molecular Weight (calculated)

53952.7 Da

IEP (calculated)

5.861

GRAVY (calculated)

0.622

Length

507 amino acids

Sequence
(BLAST)

001: MPPKPPLLQS SRLVFKVGAQ SEGSSGEETR SLDSDVKYQE VFSWSSVVLP FLFPALGGLL FGYDIGATSG ATISLQSPEL SGITWFELSA VQLGLVVSGS
101: LYGALLGSIL VYPIADFLGR RGELITAAIL YALGGLITAS APELDVLLVG RLLYGLGIGL AMHGAPLYIA ETCPSQIRGT LISLKELLIV LGILLGYFVG
201: SFEINEVGGW RYMYGLSAPI ASLMGLGLWT LPPSPRWLLL RAVQGKGSLQ ENKEKAIHAL SKLRGRPAGD KVSDMQIEHT LASLKSAYTD QESEGSFLEV
301: FQGPSLKAFI IGGGLVLSQQ ITGQPSVLYF AGSILQTAGF SAASDATRVS VLIGFFKLLM TGIAVLKVDD IGRRPLLIGG VGGLALSLLL LSAYYKFLGG
401: FPVVAVAALL LYVGCYQISF GPISWLMVSE IFPLRTRGRG ISLAVLTNFG SNAIVTFAFS PLEELLGAEN LFLLFGIIAL LSLLFVIVYV PETKGLSLEE
501: IESKILK

Best Arabidopsis Sequence Match ( AT5G59250.1 )
(BLAST)

001: MAFAVSVQSH FAIRALKRDH FKNPSPRTFC SCFKSRPDSS YLSLKERTCF VSKPGLVTTR YRHIFQVGAE TGGEFADSGE VADSLASDAP ESFSWSSVIL
101: PFIFPALGGL LFGYDIGATS GATLSLQSPA LSGTTWFNFS PVQLGLVVSG SLYGALLGSI SVYGVADFLG RRRELIIAAV LYLLGSLITG CAPDLNILLV
201: GRLLYGFGIG LAMHGAPLYI AETCPSQIRG TLISLKELFI VLGILLGFSV GSFQIDVVGG WRYMYGFGTP VALLMGLGMW SLPASPRWLL LRAVQGKGQL
301: QEYKEKAMLA LSKLRGRPPG DKISEKLVDD AYLSVKTAYE DEKSGGNFLE VFQGPNLKAL TIGGGLVLFQ QITGQPSVLY YAGSILQTAG FSAAADATRV
401: SVIIGVFKLL MTWVAVAKVD DLGRRPLLIG GVSGIALSLF LLSAYYKFLG GFPLVAVGAL LLYVGCYQIS FGPISWLMVS EIFPLRTRGR GISLAVLTNF
501: GSNAIVTFAF SPLKEFLGAE NLFLLFGGIA LVSLLFVILV VPETKGLSLE EIESKILK

Arabidopsis Description

D-xylose-proton symporter-like 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WWW9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.