Factsheet for VIT_16s0039g02170.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 4
endoplasmic reticulum 1
vacuole 1
golgi 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29016	Soybean	plasma membrane	77.4	77.25
KRH24040	Soybean	plasma membrane	76.2	76.66
PGSC0003DMT400001526	Potato	plasma membrane	75.6	75.15
Solyc03g096950.2.1	Tomato	plasma membrane	75.4	74.95
AT5G17010.4	Thale cress	plasma membrane	74.4	73.96
GSMUA_Achr11P...	Banana	plasma membrane	73.4	73.69
CDX85478	Canola	plasma membrane	74.0	73.27
CDY28736	Canola	cytosol, plasma membrane, vacuole	73.2	72.76
CDY38076	Canola	cytosol, plasma membrane, vacuole	72.8	72.51
CDY43152	Canola	cytosol, plasma membrane, vacuole	72.2	71.63
Bra032018.1-P	Field mustard	plasma membrane	72.2	71.63
CDY23466	Canola	plasma membrane	72.0	71.57
Bra021374.1-P	Field mustard	plasma membrane	72.0	71.57
CDY49922	Canola	plasma membrane	71.6	71.17
CDX92030	Canola	plasma membrane	70.8	70.52
AT3G03090.1	Thale cress	plasma membrane	70.8	70.38
Os10t0579200-01	Rice	plasma membrane	70.6	70.32
TraesCS1D01G200700.1	Wheat	plasma membrane	69.2	69.9
TraesCS1B01G211800.1	Wheat	plasma membrane	69.0	69.7
TraesCS1A01G197200.1	Wheat	plasma membrane	69.0	69.7
CDX74227	Canola	cytosol, plasma membrane, vacuole	67.0	69.36
Bra023592.1-P	Field mustard	cytosol, plasma membrane, vacuole	74.2	69.09
HORVU1Hr1G051290.3	Barley	peroxisome, plasma membrane	69.2	68.92
Bra001072.1-P	Field mustard	plasma membrane	50.8	67.73
EER91860	Sorghum	plasma membrane	69.2	67.71
CDX92028	Canola	cytosol, mitochondrion, peroxisome, vacuole	65.0	67.71
Zm00001d014435_P004	Maize	plasma membrane	69.2	63.84
VIT_06s0004g05190.t01	Wine grape	golgi, mitochondrion, plasma membrane, plastid	61.4	60.55
CDY47336	Canola	golgi, plasma membrane	27.4	52.49
VIT_03s0038g03940.t01	Wine grape	plasma membrane	30.8	20.84
VIT_18s0122g00850.t01	Wine grape	plasma membrane	30.6	20.68
VIT_07s0031g02270.t01	Wine grape	plasma membrane	29.6	19.95

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:100258018	wikigene:100258018	MapMan:24.2.2.1.2	ProteinID:ADP37177	ProteinID:ADP37177.1
EMBL:AM472233	ProteinID:CAN72732	ProteinID:CAN72732.1	ProteinID:CBI26530	ProteinID:CBI26530.3	UniProt:D7T7Q9
EMBL:FN595750	GO:GO:0003674	GO:GO:0005215	GO:GO:0005351	GO:GO:0005355	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0008643	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0035428	GO:GO:0046323	GO:GO:0055085	GO:GO:1902600	GO:GO:1904659
EMBL:HQ323312	InterPro:IPR020846	EntrezGene:LOC100258018	wikigene:LOC100258018	InterPro:MFS_dom	InterPro:MFS_sugar_transport-like
InterPro:MFS_trans_sf	PFAM:PF00083	PRINTS:PR00171	ScanProsite:PS00216	ScanProsite:PS00217	PFscan:PS50850
PANTHER:PTHR23500	PANTHER:PTHR23500:SF159	SUPFAM:SSF103473	InterPro:Sugar/inositol_transpt	InterPro:Sugar_transporter_CS	TIGRFAMs:TIGR00879
TMHMM:TMhelix	UniParc:UPI0001984D88	ArrayExpress:VIT_16s0039g02170	EnsemblPlantsGene:VIT_16s0039g02170	EnsemblPlants:VIT_16s0039g02170.t01	unigene:Vvi.12801
RefSeq:XP_002277076	RefSeq:XP_002277076.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr16:-:2220512..2245448

Molecular Weight (calculated)

52918.8 Da

IEP (calculated)

5.214

GRAVY (calculated)

0.805

Length

500 amino acids

Sequence
(BLAST)

001: MADLEQPSLT SLGKVGKSSG EIDGMQEPLI DGVGSSENYS VAAAILPFLF PALGGLLYGY DIGATSCALI SIESSSLSGI SWYDLSSVQI GLTTSGSLYG
101: ALIGSVLAFN IADFFGRRRE LILAALLYLV GALVTAVAPS FIVMVIGRFV FGIGIGLSMH AAPMYIAETA PTQIRGRLIS LKEFFIVLGM VVGYTVGSLL
201: VDMVSGWRYM YGVSSPLSVI MGIGMWWLPA SPRWLLLRAI QGKGNMQDLK ENAIFCLCRL RGPAIGDSAP AQVDGILDEL SSSEETKEAS LGEMFHGKCL
301: KALTIGGGLV LFQQITGQPS VLYYAASILE SAGFSGASDA TRVSILVGLL KLIMTAVAVL VVDKVGRRPL LLGGVSGIVI SLFLLGSYYI YLGDAPAVAV
401: IALLLYVGCY QLSFGPIGWL MISEIFPLRV RGRGLSIAVL VNFGANAIVT FSFSPLKALL GAGVLFYGFG VIAVLSLLFI FFFIPETKGL SLEEIEAKLL

Best Arabidopsis Sequence Match ( AT5G17010.4 )
(BLAST)

001: MALDPEQQQP ISSVSREFGK SSGEISPERE PLIKENHVPE NYSVVAAILP FLFPALGGLL YGYEIGATSC ATISLQSPSL SGISWYNLSS VDVGLVTSGS
101: LYGALFGSIV AFTIADVIGR RKELILAALL YLVGALVTAL APTYSVLIIG RVIYGVSVGL AMHAAPMYIA ETAPSPIRGQ LVSLKEFFIV LGMVGGYGIG
201: SLTVNVHSGW RYMYATSVPL AVIMGIGMWW LPASPRWLLL RVIQGKGNVE NQREAAIKSL CCLRGPAFVD SAAEQVNEIL AELTFVGEDK EVTFGELFQG
301: KCLKALIIGG GLVLFQQITG QPSVLYYAPS ILQTAGFSAA GDATRVSILL GLLKLIMTGV AVVVIDRLGR RPLLLGGVGG MVVSLFLLGS YYLFFSASPV
401: VAVVALLLYV GCYQLSFGPI GWLMISEIFP LKLRGRGLSL AVLVNFGANA LVTFAFSPLK ELLGAGILFC GFGVICVLSL VFIFFIVPET KGLTLEEIEA
501: KCL

Arabidopsis Description

D-xylose-proton symporter-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6AWX0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.