CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, mitochondrion, vacuole, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92030	Canola	plasma membrane	87.92	84.06
CDX74227	Canola	cytosol, plasma membrane, vacuole	84.17	83.64
CDY28736	Canola	cytosol, plasma membrane, vacuole	85.83	81.91
CDY43152	Canola	cytosol, plasma membrane, vacuole	85.42	81.35
CDY49922	Canola	plasma membrane	83.96	80.12
CDY23466	Canola	plasma membrane	83.96	80.12
AT3G03090.1	Thale cress	plasma membrane	81.67	77.93
CDX85478	Canola	plasma membrane	73.96	70.3
CDY38076	Canola	cytosol, plasma membrane, vacuole	73.33	70.12
KRH29016	Soybean	plasma membrane	68.12	65.27
VIT_16s0039g02170.t01	Wine grape	plasma membrane	67.71	65.0
KRH24040	Soybean	plasma membrane	67.29	64.99
CDY47336	Canola	golgi, plasma membrane	34.58	63.6
Solyc03g096950.2.1	Tomato	plasma membrane	65.21	62.23
PGSC0003DMT400001526	Potato	plasma membrane	65.21	62.23
GSMUA_Achr11P...	Banana	plasma membrane	61.46	59.24
TraesCS1D01G200700.1	Wheat	plasma membrane	60.21	58.38
TraesCS1A01G197200.1	Wheat	plasma membrane	60.0	58.18
TraesCS1B01G211800.1	Wheat	plasma membrane	60.0	58.18
HORVU1Hr1G051290.3	Barley	peroxisome, plasma membrane	60.42	57.77
Os10t0579200-01	Rice	plasma membrane	59.38	56.77
EER91860	Sorghum	plasma membrane	57.92	54.4
Zm00001d014435_P004	Maize	plasma membrane	58.96	52.21
CDY54245	Canola	plastid	54.58	46.87
CDY33006	Canola	plastid	54.17	46.85
CDY33275	Canola	extracellular, golgi, vacuole	7.08	28.57
CDY65623	Canola	plasma membrane	27.71	19.7
CDX69128	Canola	plasma membrane	27.5	19.33
CDY31497	Canola	plasma membrane	25.21	19.15
CDY29502	Canola	plasma membrane	25.21	18.36
CDX75492	Canola	plasma membrane	27.92	18.11
CDY33276	Canola	plasma membrane	24.79	17.81
CDX78009	Canola	plasma membrane	24.79	17.79
CDY16303	Canola	plasma membrane	24.58	17.61
CDY33650	Canola	plasma membrane	25.21	17.36
CDX73717	Canola	plasma membrane	24.58	17.33
CDX96618	Canola	plasma membrane	25.83	17.1

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.1.2	GO:A0A078DXN9	EnsemblPlants:CDX92028	ProteinID:CDX92028	ProteinID:CDX92028.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00153688001	InterPro:IPR020846	InterPro:MFS_dom
InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf	PFAM:PF00083	PRINTS:PR00171	ScanProsite:PS00216	ScanProsite:PS00217
PFscan:PS50850	PANTHER:PTHR23500	PANTHER:PTHR23500:SF159	SUPFAM:SSF103473	InterPro:Sugar/inositol_transpt	InterPro:Sugar_transporter_CS
TMHMM:TMhelix	UniParc:UPI0004EED5B8	SEG:seg	:	:	:

Description

BnaC03g33300D

Coordinates

chrLK031870:-:1322128..1329716

Molecular Weight (calculated)

51087.5 Da

IEP (calculated)

8.445

GRAVY (calculated)

0.726

Length

480 amino acids

Sequence
(BLAST)

001: MRKVEMLIRS SVCESNLQFF KKHVGDSSSG GLSSVQEPLI KQKHSPENYC VLAAIPQFLF PALGAFLFGY EIGATSCATL SIKSPTLSGI SWYNLSSVDV
101: GIITSCSHYG ALIGSIVAFN VADIIGIRKE LITAALLYLV GAIVTATAPV FPVLIIGRVV YGIGLGLTMH AAPMYIAETA PSQIRGRMIS LKEFSTVFGM
201: VGGYGIGSLW ITVAFTALSI HGKGDVERLQ QAAIKSLRRL RGSAVVDSAA EQVNEILAEL SSVGEDKEAT IGELFQGKCL KALTIAGGLV LFQQITGQPS
301: VLYYAPSILQ TAGFSAATDA TRISILLGLL KLAMTGVAVI VIDKLGRRPL LLGGVSGMVL SLFLLGSYYI FYNNVPAVAV AALLLYVGCY QLSFGPISWL
401: MMSEIFPLKL RGRGISIAVL VNFGTNALVT FAFSPLKELL GAGVLFCGFG VICVLSLFFI YFIVPETKGL TLEEIEAKCL

Best Arabidopsis Sequence Match ( AT3G03090.1 )
(BLAST)

001: MGFDPENQSI SSVGQVVGDS SSGGITAEKE PLLKENHSPE NYSVLAAIPP FLFPALGALL FGYEIGATSC AIMSLKSPTL SGISWYDLSS VDVGIITSGS
101: LYGALIGSIV AFSVADIIGR RKELILAAFL YLVGAIVTVV APVFSILIIG RVTYGMGIGL TMHAAPMYIA ETAPSQIRGR MISLKEFSTV LGMVGGYGIG
201: SLWITVISGW RYMYATILPF PVIMGTGMCW LPASPRWLLL RALQGQGNGE NLQQAAIRSL CRLRGSVIAD SAAEQVNEIL AELSLVGEDK EATFGELFRG
301: KCLKALTIAG GLVLFQQITG QPSVLYYAPS ILQTAGFSAA ADATRISILL GLLKLVMTGV SVIVIDRVGR RPLLLCGVSG MVISLFLLGS YYMFYKNVPA
401: VAVAALLLYV GCYQLSFGPI GWLMISEIFP LKLRGRGISL AVLVNFGANA LVTFAFSPLK ELLGAGILFC AFGVICVVSL FFIYYIVPET KGLTLEEIEA
501: KCL

Arabidopsis Description

AtVGT1D-xylose-proton symporter-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Z8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.