CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
endoplasmic reticulum 1
plasma membrane 3
vacuole 1
golgi 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74227	Canola	cytosol, plasma membrane, vacuole	90.64	94.2
CDY43152	Canola	cytosol, plasma membrane, vacuole	90.04	89.68
CDY28736	Canola	cytosol, plasma membrane, vacuole	89.84	89.66
CDY49922	Canola	plasma membrane	89.44	89.26
CDY23466	Canola	plasma membrane	89.44	89.26
CDX92028	Canola	cytosol, mitochondrion, peroxisome, vacuole	84.06	87.92
AT3G03090.1	Thale cress	plasma membrane	85.26	85.09
CDX85478	Canola	plasma membrane	77.09	76.63
CDY38076	Canola	cytosol, plasma membrane, vacuole	76.49	76.49
KRH29016	Soybean	plasma membrane	71.31	71.46
KRH24040	Soybean	plasma membrane	70.12	70.83
VIT_16s0039g02170.t01	Wine grape	plasma membrane	70.52	70.8
CDY47336	Canola	golgi, plasma membrane	35.26	67.82
Solyc03g096950.2.1	Tomato	plasma membrane	67.73	67.59
PGSC0003DMT400001526	Potato	plasma membrane	67.33	67.2
GSMUA_Achr11P...	Banana	plasma membrane	64.94	65.46
TraesCS1A01G197200.1	Wheat	plasma membrane	63.74	64.65
TraesCS1B01G211800.1	Wheat	plasma membrane	63.74	64.65
TraesCS1D01G200700.1	Wheat	plasma membrane	63.74	64.65
HORVU1Hr1G051290.3	Barley	peroxisome, plasma membrane	63.55	63.55
Os10t0579200-01	Rice	plasma membrane	62.55	62.55
EER91860	Sorghum	plasma membrane	61.35	60.27
Zm00001d014435_P004	Maize	plasma membrane	61.95	57.38
CDY33006	Canola	plastid	57.17	51.71
CDY54245	Canola	plastid	57.37	51.52
CDY33275	Canola	extracellular, golgi, vacuole	7.17	30.25
CDY31497	Canola	plasma membrane	26.69	21.2
CDY65623	Canola	plasma membrane	28.49	21.19
CDX69128	Canola	plasma membrane	28.29	20.79
CDY29502	Canola	plasma membrane	26.69	20.33
CDY33276	Canola	plasma membrane	26.1	19.61
CDX75492	Canola	plasma membrane	28.69	19.46
CDY16303	Canola	plasma membrane	25.9	19.4
CDX78009	Canola	plasma membrane	25.7	19.28
CDY33650	Canola	plasma membrane	26.69	19.23
CDX73717	Canola	plasma membrane	25.5	18.8
CDX96618	Canola	plasma membrane	27.09	18.76

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.1.2	GO:A0A078DRX3	EnsemblPlants:CDX92030	ProteinID:CDX92030	ProteinID:CDX92030.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00153690001	InterPro:IPR020846	InterPro:MFS_dom
InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf	PFAM:PF00083	PRINTS:PR00171	ScanProsite:PS00216	ScanProsite:PS00217
PFscan:PS50850	PANTHER:PTHR23500	PANTHER:PTHR23500:SF159	SUPFAM:SSF103473	InterPro:Sugar/inositol_transpt	InterPro:Sugar_transporter_CS
TIGRFAMs:TIGR00879	TMHMM:TMhelix	UniParc:UPI0004EE0915	SEG:seg	:	:

Description

BnaC03g33320D

Coordinates

chrLK031870:-:1339533..1342813

Molecular Weight (calculated)

53503.5 Da

IEP (calculated)

7.331

GRAVY (calculated)

0.749

Length

502 amino acids

Sequence
(BLAST)

001: MVFDAEKQSI VHVEQIGDSS SGGLSSLQEP LIQQKHSPEN YSVLAAIPPF LFPALGAFLF GYEIGATSCA TISIKSPTLS GISWYNLSSV DVGIITSGSL
101: YGALIGSIVA FSIADIIGRR KGLITAAFLY LVGAIVTALA PVFHVLIIGR VVYGIGVGLT MHAAPMYIAE TAPSQIRGRM ISLKEFSTVF GMVGGYGIGS
201: LWVTVISGWR YMYATVIPVP IIMAIGMCWL PASPRWLLLR SLQGKGDAES LQDEAIKSLR RLRGSVVVDS AAEQVDEILA ELSSVGEDKE ATIGELFQGK
301: CLKALTIAGG LVLFQQITGQ PSVLYYAPSI LQTAGFSAAT DATRISILLG ILKLVMTGVA IVVIDKLGRR PLLLGGVSGM VISLFLLGSY YIFYNNVPAV
401: AVAALLLYVG CYQLSFGPIS WLMMSEIFPL KLRGRGISIA VLVNFGTNAL VTFAFSPMKE LLGAGVLFCG FGAICVLSLF FIYFIVPETK GLTLEEIEAK
501: CL

Best Arabidopsis Sequence Match ( AT3G03090.1 )
(BLAST)

001: MGFDPENQSI SSVGQVVGDS SSGGITAEKE PLLKENHSPE NYSVLAAIPP FLFPALGALL FGYEIGATSC AIMSLKSPTL SGISWYDLSS VDVGIITSGS
101: LYGALIGSIV AFSVADIIGR RKELILAAFL YLVGAIVTVV APVFSILIIG RVTYGMGIGL TMHAAPMYIA ETAPSQIRGR MISLKEFSTV LGMVGGYGIG
201: SLWITVISGW RYMYATILPF PVIMGTGMCW LPASPRWLLL RALQGQGNGE NLQQAAIRSL CRLRGSVIAD SAAEQVNEIL AELSLVGEDK EATFGELFRG
301: KCLKALTIAG GLVLFQQITG QPSVLYYAPS ILQTAGFSAA ADATRISILL GLLKLVMTGV SVIVIDRVGR RPLLLCGVSG MVISLFLLGS YYMFYKNVPA
401: VAVAALLLYV GCYQLSFGPI GWLMISEIFP LKLRGRGISL AVLVNFGANA LVTFAFSPLK ELLGAGILFC AFGVICVVSL FFIYYIVPET KGLTLEEIEA
501: KCL

Arabidopsis Description

AtVGT1D-xylose-proton symporter-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Z8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.