Factsheet for AT3G03090.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
endoplasmic reticulum 1
vacuole 1
golgi 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032018.1-P	Field mustard	plasma membrane	88.87	88.69
CDY28736	Canola	cytosol, plasma membrane, vacuole	88.67	88.67
CDY43152	Canola	cytosol, plasma membrane, vacuole	88.47	88.29
Bra021374.1-P	Field mustard	plasma membrane	87.67	87.67
CDY23466	Canola	plasma membrane	87.67	87.67
CDY49922	Canola	plasma membrane	87.28	87.28
CDX92030	Canola	plasma membrane	85.09	85.26
CDX74227	Canola	cytosol, plasma membrane, vacuole	80.91	84.27
Bra001072.1-P	Field mustard	plasma membrane	61.63	82.67
CDX92028	Canola	cytosol, mitochondrion, peroxisome, vacuole	77.93	81.67
AT5G17010.4	Thale cress	plasma membrane	79.52	79.52
KRH29016	Soybean	plasma membrane	70.58	70.86
VIT_16s0039g02170.t01	Wine grape	plasma membrane	70.38	70.8
KRH24040	Soybean	plasma membrane	69.78	70.62
PGSC0003DMT400001526	Potato	plasma membrane	67.79	67.79
Solyc03g096950.2.1	Tomato	plasma membrane	67.79	67.79
TraesCS1D01G200700.1	Wheat	plasma membrane	64.81	65.86
TraesCS1A01G197200.1	Wheat	plasma membrane	64.81	65.86
TraesCS1B01G211800.1	Wheat	plasma membrane	64.61	65.66
HORVU1Hr1G051290.3	Barley	peroxisome, plasma membrane	65.21	65.34
GSMUA_Achr11P...	Banana	plasma membrane	64.21	64.86
Os10t0579200-01	Rice	plasma membrane	64.02	64.14
EER91860	Sorghum	plasma membrane	62.82	61.84
CDY47336	Canola	golgi, plasma membrane	31.81	61.3
Zm00001d014435_P004	Maize	plasma membrane	63.42	58.86
AT5G59250.1	Thale cress	plastid	58.05	52.33
AT4G35300.7	Thale cress	plasma membrane	28.03	19.08
AT3G51490.2	Thale cress	plasma membrane	26.84	18.32
AT1G20840.2	Thale cress	golgi, plasma membrane	25.65	17.57

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.1.2	EntrezGene:821117	ProteinID:AAF26115.1	ProteinID:AEE73900.1	ArrayExpress:AT3G03090
EnsemblPlantsGene:AT3G03090	RefSeq:AT3G03090	TAIR:AT3G03090	RefSeq:AT3G03090-TAIR-G	EnsemblPlants:AT3G03090.1	TAIR:AT3G03090.1
EMBL:AY140054	Unigene:At.41032	Symbol:AtVGT1	EMBL:BT010375	GO:GO:0000003	GO:GO:0003674
GO:GO:0005215	GO:GO:0005351	GO:GO:0005353	GO:GO:0005355	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0007275
GO:GO:0008150	GO:GO:0008643	GO:GO:0009605	GO:GO:0009607	GO:GO:0009624	GO:GO:0009705
GO:GO:0009791	GO:GO:0009845	GO:GO:0009908	GO:GO:0009911	GO:GO:0015755	GO:GO:0015758
GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0046323	GO:GO:0055085
GO:GO:1902600	GO:GO:1904659	InterPro:IPR020846	InterPro:MFS_dom	InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf
RefSeq:NP_186959.2	PFAM:PF00083	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281
PRINTS:PR00171	ScanProsite:PS00216	PFscan:PS50850	PANTHER:PTHR23500	PANTHER:PTHR23500:SF159	UniProt:Q8L6Z8
SUPFAM:SSF103473	InterPro:Sugar/inositol_transpt	InterPro:Sugar_transporter_CS	TIGRFAMs:TIGR00879	TMHMM:TMhelix	UniParc:UPI000009D3A6
SEG:seg	:	:	:	:	:

Description

AtVGT1D-xylose-proton symporter-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Z8]

Coordinates

chr3:-:700433..704828

Molecular Weight (calculated)

53545.6 Da

IEP (calculated)

7.596

GRAVY (calculated)

0.752

Length

503 amino acids

Sequence
(BLAST)

001: MGFDPENQSI SSVGQVVGDS SSGGITAEKE PLLKENHSPE NYSVLAAIPP FLFPALGALL FGYEIGATSC AIMSLKSPTL SGISWYDLSS VDVGIITSGS
101: LYGALIGSIV AFSVADIIGR RKELILAAFL YLVGAIVTVV APVFSILIIG RVTYGMGIGL TMHAAPMYIA ETAPSQIRGR MISLKEFSTV LGMVGGYGIG
201: SLWITVISGW RYMYATILPF PVIMGTGMCW LPASPRWLLL RALQGQGNGE NLQQAAIRSL CRLRGSVIAD SAAEQVNEIL AELSLVGEDK EATFGELFRG
301: KCLKALTIAG GLVLFQQITG QPSVLYYAPS ILQTAGFSAA ADATRISILL GLLKLVMTGV SVIVIDRVGR RPLLLCGVSG MVISLFLLGS YYMFYKNVPA
401: VAVAALLLYV GCYQLSFGPI GWLMISEIFP LKLRGRGISL AVLVNFGANA LVTFAFSPLK ELLGAGILFC AFGVICVVSL FFIYYIVPET KGLTLEEIEA
501: KCL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.