CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
endoplasmic reticulum 1
vacuole 1
golgi 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23466	Canola	plasma membrane	99.2	99.2
CDY28736	Canola	cytosol, plasma membrane, vacuole	92.25	92.25
CDY43152	Canola	cytosol, plasma membrane, vacuole	92.05	91.87
CDX92030	Canola	plasma membrane	89.26	89.44
CDX74227	Canola	cytosol, plasma membrane, vacuole	84.1	87.58
AT3G03090.1	Thale cress	plasma membrane	87.28	87.28
CDX92028	Canola	cytosol, mitochondrion, peroxisome, vacuole	80.12	83.96
CDX85478	Canola	plasma membrane	78.13	77.82
CDY38076	Canola	cytosol, plasma membrane, vacuole	77.53	77.69
VIT_16s0039g02170.t01	Wine grape	plasma membrane	71.17	71.6
KRH29016	Soybean	plasma membrane	70.58	70.86
KRH24040	Soybean	plasma membrane	69.58	70.42
Solyc03g096950.2.1	Tomato	plasma membrane	68.19	68.19
PGSC0003DMT400001526	Potato	plasma membrane	67.99	67.99
GSMUA_Achr11P...	Banana	plasma membrane	66.0	66.67
TraesCS1A01G197200.1	Wheat	plasma membrane	64.02	65.05
TraesCS1D01G200700.1	Wheat	plasma membrane	64.02	65.05
TraesCS1B01G211800.1	Wheat	plasma membrane	63.82	64.85
Os10t0579200-01	Rice	plasma membrane	63.82	63.94
HORVU1Hr1G051290.3	Barley	peroxisome, plasma membrane	63.82	63.94
CDY47336	Canola	golgi, plasma membrane	32.6	62.84
EER91860	Sorghum	plasma membrane	61.83	60.86
Zm00001d014435_P004	Maize	plasma membrane	62.62	58.12
CDY33006	Canola	plastid	57.26	51.89
CDY54245	Canola	plastid	57.26	51.52
CDY33275	Canola	extracellular, golgi, vacuole	7.75	32.77
CDY65623	Canola	plasma membrane	28.83	21.48
CDX69128	Canola	plasma membrane	28.83	21.23
CDY31497	Canola	plasma membrane	26.44	21.04
CDY29502	Canola	plasma membrane	26.44	20.18
CDX75492	Canola	plasma membrane	29.03	19.73
CDY33276	Canola	plasma membrane	25.84	19.46
CDX78009	Canola	plasma membrane	25.65	19.28
CDY16303	Canola	plasma membrane	25.65	19.25
CDY33650	Canola	plasma membrane	26.44	19.08
CDX73717	Canola	plasma membrane	25.45	18.8
CDX96618	Canola	plasma membrane	26.24	18.21

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.1.2	GO:A0A078IJ13	UniProt:A0A078IJ13	EnsemblPlants:CDY49922	ProteinID:CDY49922
ProteinID:CDY49922.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00094088001	InterPro:IPR020846
InterPro:MFS_dom	InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf	PFAM:PF00083	PRINTS:PR00171	ScanProsite:PS00216
ScanProsite:PS00217	PFscan:PS50850	PANTHER:PTHR23500	PANTHER:PTHR23500:SF159	SUPFAM:SSF103473	InterPro:Sugar/inositol_transpt
InterPro:Sugar_transporter_CS	TIGRFAMs:TIGR00879	TMHMM:TMhelix	UniParc:UPI0004EEEF54	SEG:seg	:

Description

BnaCnng18320DBnaCnng18320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJ13]

Coordinates

chrLK032869:-:9735..13492

Molecular Weight (calculated)

53545.7 Da

IEP (calculated)

8.313

GRAVY (calculated)

0.782

Length

503 amino acids

Sequence
(BLAST)

001: MVFDSEKQSI VSLGQVGDSS SGGISSVKEP LIKENHHSPE DYSVLAAIPS FLFPALGALL FGYEIGATSC AIISIKSPTL SGISWYNLSP VDVGIITSGS
101: LYGALIGSIV AFSIADTIGR RKELILAAFL YLVGAIVTSL APVFSVLIIG RLMYGVGIGL TMHAAPMYIA ETSPSQIRGR MISLKEFSTV IGMVGGYGIG
201: SLWVTVISGW RYMYATIIPV PVIMGIGMCW LPASPRWLLL RSLQGKGNVE SLQQAAIRSL RRLRGSVVVD SAVEQVDEIL AELSSVGEGK EATLGEIFQG
301: KCLKALTIAG GLVLLQQITG QPSVLYYAPS ILQTAGFSAA TDATRISILL GLLKLVMTGA AVIVIDKLGR RPLLFGGVSG MVISLFLLGS YYIFYNTVPA
401: VAVVALLLYV GCYQLSFGPI GWLMISEIFP LKLRGRGISI AVLVNFGTNA LVTFAFSPLK ELFGAGVLFF GFGVICVLSL FFIYFIVPET KGLTLEEIEA
501: KCL

Best Arabidopsis Sequence Match ( AT3G03090.1 )
(BLAST)

001: MGFDPENQSI SSVGQVVGDS SSGGITAEKE PLLKENHSPE NYSVLAAIPP FLFPALGALL FGYEIGATSC AIMSLKSPTL SGISWYDLSS VDVGIITSGS
101: LYGALIGSIV AFSVADIIGR RKELILAAFL YLVGAIVTVV APVFSILIIG RVTYGMGIGL TMHAAPMYIA ETAPSQIRGR MISLKEFSTV LGMVGGYGIG
201: SLWITVISGW RYMYATILPF PVIMGTGMCW LPASPRWLLL RALQGQGNGE NLQQAAIRSL CRLRGSVIAD SAAEQVNEIL AELSLVGEDK EATFGELFRG
301: KCLKALTIAG GLVLFQQITG QPSVLYYAPS ILQTAGFSAA ADATRISILL GLLKLVMTGV SVIVIDRVGR RPLLLCGVSG MVISLFLLGS YYMFYKNVPA
401: VAVAALLLYV GCYQLSFGPI GWLMISEIFP LKLRGRGISL AVLVNFGANA LVTFAFSPLK ELLGAGILFC AFGVICVVSL FFIYYIVPET KGLTLEEIEA
501: KCL

Arabidopsis Description

AtVGT1D-xylose-proton symporter-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Z8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.