Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002596.1-P | Field mustard | plastid | 90.68 | 91.17 |
| CDY33006 | Canola | plastid | 90.5 | 90.99 |
| CDY54245 | Canola | plastid | 91.04 | 90.88 |
| VIT_06s0004g05190.t01 | Wine grape | golgi, mitochondrion, plasma membrane, plastid | 71.86 | 79.09 |
| Os03t0823100-01 | Rice | plasma membrane | 40.14 | 73.93 |
| PGSC0003DMT400026885 | Potato | plasma membrane | 71.51 | 73.21 |
| Solyc03g078000.2.1 | Tomato | plastid | 71.33 | 73.03 |
| KRH29747 | Soybean | plastid | 71.68 | 72.46 |
| KRH24741 | Soybean | plastid | 71.15 | 70.89 |
| GSMUA_Achr10P... | Banana | plastid | 67.56 | 67.68 |
| EER90617 | Sorghum | plastid | 64.34 | 63.54 |
| TraesCS5A01G484700.1 | Wheat | plastid | 63.44 | 62.43 |
| HORVU5Hr1G114020.2 | Barley | plastid | 63.98 | 62.3 |
| TraesCS5D01G498200.1 | Wheat | plastid | 63.08 | 62.3 |
| TraesCS5B01G498000.2 | Wheat | mitochondrion, plastid | 62.9 | 62.12 |
| Os03t0823200-01 | Rice | extracellular, mitochondrion, plasma membrane | 12.01 | 62.04 |
| AT5G17010.4 | Thale cress | plasma membrane | 53.76 | 59.64 |
| AT3G03090.1 | Thale cress | plasma membrane | 52.33 | 58.05 |
| Zm00001d012938_P002 | Maize | plastid | 64.52 | 57.97 |
| AT4G35300.7 | Thale cress | plasma membrane | 27.24 | 20.57 |
| AT3G51490.2 | Thale cress | plasma membrane | 25.99 | 19.67 |
| AT1G20840.2 | Thale cress | golgi, plasma membrane | 25.27 | 19.21 |
Protein Annotations
| Gene3D:1.20.1250.20 | MapMan:24.2.2.1.2 | EntrezGene:836043 | UniProt:A0A178UN85 | ProteinID:AED97162.1 | EMBL:AK226214 |
| ArrayExpress:AT5G59250 | EnsemblPlantsGene:AT5G59250 | RefSeq:AT5G59250 | TAIR:AT5G59250 | RefSeq:AT5G59250-TAIR-G | EnsemblPlants:AT5G59250.1 |
| TAIR:AT5G59250.1 | Unigene:At.43196 | ProteinID:BAB09770.1 | EMBL:BT015354 | EMBL:BT020338 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005351 | GO:GO:0005355 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008643 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009941 | GO:GO:0015992 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0031969 |
| GO:GO:0035428 | GO:GO:0046323 | GO:GO:0055085 | GO:GO:1902600 | GO:GO:1904659 | InterPro:IPR020846 |
| InterPro:MFS_dom | InterPro:MFS_sugar_transport-like | InterPro:MFS_trans_sf | RefSeq:NP_200733.2 | ProteinID:OAO94930.1 | PFAM:PF00083 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00171 |
| ScanProsite:PS00217 | PFscan:PS50850 | PANTHER:PTHR23500 | PANTHER:PTHR23500:SF159 | UniProt:Q0WWW9 | SUPFAM:SSF103473 |
| InterPro:Sugar/inositol_transpt | InterPro:Sugar_transporter_CS | TIGRFAMs:TIGR00879 | TMHMM:TMhelix | UniParc:UPI00000A74C7 | SEG:seg |
Description
D-xylose-proton symporter-like 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WWW9]
Coordinates
chr5:+:23903872..23907111
Molecular Weight (calculated)
59832.7 Da
IEP (calculated)
9.139
GRAVY (calculated)
0.549
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFAVSVQSH FAIRALKRDH FKNPSPRTFC SCFKSRPDSS YLSLKERTCF VSKPGLVTTR YRHIFQVGAE TGGEFADSGE VADSLASDAP ESFSWSSVIL
101: PFIFPALGGL LFGYDIGATS GATLSLQSPA LSGTTWFNFS PVQLGLVVSG SLYGALLGSI SVYGVADFLG RRRELIIAAV LYLLGSLITG CAPDLNILLV
201: GRLLYGFGIG LAMHGAPLYI AETCPSQIRG TLISLKELFI VLGILLGFSV GSFQIDVVGG WRYMYGFGTP VALLMGLGMW SLPASPRWLL LRAVQGKGQL
301: QEYKEKAMLA LSKLRGRPPG DKISEKLVDD AYLSVKTAYE DEKSGGNFLE VFQGPNLKAL TIGGGLVLFQ QITGQPSVLY YAGSILQTAG FSAAADATRV
401: SVIIGVFKLL MTWVAVAKVD DLGRRPLLIG GVSGIALSLF LLSAYYKFLG GFPLVAVGAL LLYVGCYQIS FGPISWLMVS EIFPLRTRGR GISLAVLTNF
501: GSNAIVTFAF SPLKEFLGAE NLFLLFGGIA LVSLLFVILV VPETKGLSLE EIESKILK
101: PFIFPALGGL LFGYDIGATS GATLSLQSPA LSGTTWFNFS PVQLGLVVSG SLYGALLGSI SVYGVADFLG RRRELIIAAV LYLLGSLITG CAPDLNILLV
201: GRLLYGFGIG LAMHGAPLYI AETCPSQIRG TLISLKELFI VLGILLGFSV GSFQIDVVGG WRYMYGFGTP VALLMGLGMW SLPASPRWLL LRAVQGKGQL
301: QEYKEKAMLA LSKLRGRPPG DKISEKLVDD AYLSVKTAYE DEKSGGNFLE VFQGPNLKAL TIGGGLVLFQ QITGQPSVLY YAGSILQTAG FSAAADATRV
401: SVIIGVFKLL MTWVAVAKVD DLGRRPLLIG GVSGIALSLF LLSAYYKFLG GFPLVAVGAL LLYVGCYQIS FGPISWLMVS EIFPLRTRGR GISLAVLTNF
501: GSNAIVTFAF SPLKEFLGAE NLFLLFGGIA LVSLLFVILV VPETKGLSLE EIESKILK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.