Factsheet for Os03t0823100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
plasma membrane 3
vacuole 1
golgi 1
extracellular 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
YLoc:	plasma membrane

plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90617	Sorghum	plastid	86.47	46.37
VIT_06s0004g05190.t01	Wine grape	golgi, mitochondrion, plasma membrane, plastid	73.93	44.18
TraesCS5A01G484700.1	Wheat	plastid	82.18	43.92
TraesCS5D01G498200.1	Wheat	plastid	81.52	43.72
HORVU5Hr1G114020.2	Barley	plastid	82.51	43.63
TraesCS5B01G498000.2	Wheat	mitochondrion, plastid	81.19	43.54
GSMUA_Achr10P...	Banana	plastid	78.22	42.55
Zm00001d012938_P002	Maize	plastid	87.13	42.51
Solyc03g078000.2.1	Tomato	plastid	73.27	40.73
PGSC0003DMT400026885	Potato	plasma membrane	73.27	40.73
Bra002596.1-P	Field mustard	plastid	74.59	40.72
CDY33006	Canola	plastid	74.59	40.72
CDY54245	Canola	plastid	74.59	40.43
AT5G59250.1	Thale cress	plastid	73.93	40.14
KRH29747	Soybean	plastid	72.28	39.67
KRH24741	Soybean	plastid	72.28	39.11
Os10t0579200-01	Rice	plasma membrane	60.4	36.45
Os04t0654550-00	Rice	endoplasmic reticulum, extracellular	4.62	20.9
Os03t0128932-00	Rice	nucleus	20.79	14.58
Os02t0229400-01	Rice	plasma membrane	30.36	12.33
Os10t0539900-01	Rice	plasma membrane	29.7	12.16
Os11t0475600-01	Rice	plasma membrane	30.36	12.15
Os11t0620400-01	Rice	plasma membrane	25.08	11.55
Os02t0832100-00	Rice	golgi, mitochondrion, plasma membrane, plastid	12.21	8.33
Os03t0823200-01	Rice	extracellular, mitochondrion, plasma membrane	1.65	4.63

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.1.2	ProteinID:BAH92419.1	ProteinID:BAS87118.1	UniProt:C7J066	ncoils:Coil
GO:GO:0003674	GO:GO:0005215	GO:GO:0005351	GO:GO:0005355	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0008643	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0046323
GO:GO:0055085	GO:GO:1902600	InterPro:IPR020846	InterPro:MFS_dom	InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf
EnsemblPlantsGene:Os03g0823100	EnsemblPlants:Os03t0823100-01	PFAM:PF00083	PRINTS:PR00171	PFscan:PS50850	PANTHER:PTHR23500
PANTHER:PTHR23500:SF159	SUPFAM:SSF103473	InterPro:Sugar/inositol_transpt	TMHMM:TMhelix	UniParc:UPI0000E122A6	SEG:seg

Description

Major facilitator superfamily protein. (Os03t0823100-01)

Coordinates

chr3:-:34554649..34556794

Molecular Weight (calculated)

32772.7 Da

IEP (calculated)

10.045

GRAVY (calculated)

0.607

Length

303 amino acids

Sequence
(BLAST)

001: DVVGGWRYMF GFGAPLAVIM AIGMWNLPPS PRWLLLRAVQ GKASVEDNKK KAIQALRSLR GRFRSDRVLA DEIDDTLLSI KAAYAEQESE GNIWKMFEGA
101: SLKALIIGGG LVLFQQITGQ PSVLYYATSI LQTAGFAAAS DAAKVSILIG LFKLLMTGVA VFKVDDLGRR PLLIGGIGGI AVSLFLLAAY YKILNSFPFV
201: AVGALLLYVG SYQVSFGPIS WLMVSEIFPL RTRGRGISLA VLTNFGSNAL VTFAFSPLQE FLGPANIFLL FGAISLLSLV FVILKVPETK GLTLEEIESK
301: LLK

Best Arabidopsis Sequence Match ( AT5G59250.1 )
(BLAST)

001: MAFAVSVQSH FAIRALKRDH FKNPSPRTFC SCFKSRPDSS YLSLKERTCF VSKPGLVTTR YRHIFQVGAE TGGEFADSGE VADSLASDAP ESFSWSSVIL
101: PFIFPALGGL LFGYDIGATS GATLSLQSPA LSGTTWFNFS PVQLGLVVSG SLYGALLGSI SVYGVADFLG RRRELIIAAV LYLLGSLITG CAPDLNILLV
201: GRLLYGFGIG LAMHGAPLYI AETCPSQIRG TLISLKELFI VLGILLGFSV GSFQIDVVGG WRYMYGFGTP VALLMGLGMW SLPASPRWLL LRAVQGKGQL
301: QEYKEKAMLA LSKLRGRPPG DKISEKLVDD AYLSVKTAYE DEKSGGNFLE VFQGPNLKAL TIGGGLVLFQ QITGQPSVLY YAGSILQTAG FSAAADATRV
401: SVIIGVFKLL MTWVAVAKVD DLGRRPLLIG GVSGIALSLF LLSAYYKFLG GFPLVAVGAL LLYVGCYQIS FGPISWLMVS EIFPLRTRGR GISLAVLTNF
501: GSNAIVTFAF SPLKEFLGAE NLFLLFGGIA LVSLLFVILV VPETKGLSLE EIESKILK

Arabidopsis Description

D-xylose-proton symporter-like 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WWW9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.