CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0823100-01	Rice	plasma membrane	46.37	86.47
Zm00001d012938_P002	Maize	plastid	91.5	83.25
Os03t0823200-01	Rice	extracellular, mitochondrion, plasma membrane	14.34	75.0
TraesCS5D01G498200.1	Wheat	plastid	74.87	74.87
TraesCS5B01G498000.2	Wheat	mitochondrion, plastid	74.34	74.34
TraesCS5A01G484700.1	Wheat	plastid	74.51	74.25
HORVU5Hr1G114020.2	Barley	plastid	75.22	74.17
VIT_06s0004g05190.t01	Wine grape	golgi, mitochondrion, plasma membrane, plastid	64.78	72.19
GSMUA_Achr10P...	Banana	plastid	67.43	68.4
Bra002596.1-P	Field mustard	plastid	64.96	66.13
PGSC0003DMT400026885	Potato	plasma membrane	63.72	66.06
Solyc03g078000.2.1	Tomato	plastid	63.72	66.06
CDY33006	Canola	plastid	64.78	65.95
KRH29747	Soybean	plastid	64.42	65.94
CDY54245	Canola	plastid	64.96	65.65
AT5G59250.1	Thale cress	plastid	63.54	64.34
KRH24741	Soybean	plastid	63.72	64.29
EER91860	Sorghum	plasma membrane	51.86	57.34
EER94578	Sorghum	golgi, plasma membrane, vacuole	27.08	20.68
KXG29850	Sorghum	plasma membrane	25.49	19.33
EER90435	Sorghum	plasma membrane	25.31	18.64
OQU86030	Sorghum	plasma membrane	15.58	17.67
EES08863	Sorghum	peroxisome, plastid	19.47	14.78

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.1.2	UniProt:C5WUZ1	ncoils:Coil	EnsemblPlants:EER90617	ProteinID:EER90617
ProteinID:EER90617.2	GO:GO:0003674	GO:GO:0005215	GO:GO:0005351	GO:GO:0005355	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009941	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857
GO:GO:0035428	GO:GO:0046323	GO:GO:0055085	GO:GO:1902600	GO:GO:1904659	InterPro:IPR020846
InterPro:MFS_dom	InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf	PFAM:PF00083	PRINTS:PR00171	ScanProsite:PS00217
PFscan:PS50850	PANTHER:PTHR23500	PANTHER:PTHR23500:SF159	EnsemblPlantsGene:SORBI_3001G032200	SUPFAM:SSF103473	InterPro:Sugar/inositol_transpt
InterPro:Sugar_transporter_CS	TIGRFAMs:TIGR00879	TMHMM:TMhelix	UniParc:UPI00081AD502	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:2447498..2453413

Molecular Weight (calculated)

59239.9 Da

IEP (calculated)

9.900

GRAVY (calculated)

0.626

Length

565 amino acids

Sequence
(BLAST)

001: MATLGLFPSS VAASTATIRA PAPTGPTSAS TRQPPHARRL PVLGRRAPAM DALRVSGAAE PLLFPAATAA GGHPRLRVRT HVQGGGGAGR GAAAEGDAAF
101: SWAPVILPFF FPALGGLLFG YDIGATSGAT ISVQSPDLSG TDWFSLSSLQ LGLVASSSLY GALGGSLLAY RIADFLGRRI ELVTAAALYI VGALVTGFAP
201: NFVVLIIGRV LYGIGIGLAM HGAPLYIAET SPSQIRGTLI SLKELFIVLG ILLGYFVGSL EIDNVGGWRY MFGFSAPLAV IMAIGMWTLP SSPRWLLLRA
301: VQGKASMEDN KKKAIQALRT LRGRSASEKV LTDDVEDTIV SIKAAYAGQE AEGNVWEVFE GASLKAFTIG GGLVLFQQIT GQPSVLYYAA SILQTAGYSA
401: ASDAAKVAIL IGLFKLLMTG VAVFKVDDVG RRPLLIGGVG GIALSLFLLA AYYKILDGFP FVAVGALLLY VGAYQVSFGP ISWLMVSEIF PLRTRGRGIS
501: LAVLTNFGSN ALVTFAFSPL KEFLGPANIF FLFGVIAVLS LVFVILVVPE TKGLSLEEIE SKILK

Best Arabidopsis Sequence Match ( AT5G59250.1 )
(BLAST)

001: MAFAVSVQSH FAIRALKRDH FKNPSPRTFC SCFKSRPDSS YLSLKERTCF VSKPGLVTTR YRHIFQVGAE TGGEFADSGE VADSLASDAP ESFSWSSVIL
101: PFIFPALGGL LFGYDIGATS GATLSLQSPA LSGTTWFNFS PVQLGLVVSG SLYGALLGSI SVYGVADFLG RRRELIIAAV LYLLGSLITG CAPDLNILLV
201: GRLLYGFGIG LAMHGAPLYI AETCPSQIRG TLISLKELFI VLGILLGFSV GSFQIDVVGG WRYMYGFGTP VALLMGLGMW SLPASPRWLL LRAVQGKGQL
301: QEYKEKAMLA LSKLRGRPPG DKISEKLVDD AYLSVKTAYE DEKSGGNFLE VFQGPNLKAL TIGGGLVLFQ QITGQPSVLY YAGSILQTAG FSAAADATRV
401: SVIIGVFKLL MTWVAVAKVD DLGRRPLLIG GVSGIALSLF LLSAYYKFLG GFPLVAVGAL LLYVGCYQIS FGPISWLMVS EIFPLRTRGR GISLAVLTNF
501: GSNAIVTFAF SPLKEFLGAE NLFLLFGGIA LVSLLFVILV VPETKGLSLE EIESKILK

Arabidopsis Description

D-xylose-proton symporter-like 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WWW9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.