Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 8
- endoplasmic reticulum 3
- vacuole 3
- golgi 3
- extracellular 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25724727
|
msms PMID:
25724727
doi
Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan; National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan; National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan. Electronic address: skomatsu@affrc.go.jp.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH60612 | Soybean | plasma membrane | 95.12 | 95.64 |
| KRH14010 | Soybean | plasma membrane | 77.91 | 85.82 |
| KRH74104 | Soybean | plasma membrane | 81.98 | 85.09 |
| PGSC0003DMT400038021 | Potato | extracellular | 25.2 | 78.48 |
| VIT_03s0038g03940.t01 | Wine grape | plasma membrane | 76.15 | 76.05 |
| KRH51563 | Soybean | endoplasmic reticulum | 74.53 | 74.63 |
| KRH60881 | Soybean | endoplasmic reticulum | 74.39 | 74.39 |
| CDY65623 | Canola | plasma membrane | 67.89 | 74.22 |
| CDX69128 | Canola | plasma membrane | 68.43 | 73.94 |
| AT4G35300.7 | Thale cress | plasma membrane | 73.98 | 73.88 |
| Bra011604.1-P | Field mustard | plasma membrane | 73.71 | 73.51 |
| CDX75492 | Canola | plasma membrane | 73.71 | 73.51 |
| KRH07812 | Soybean | plasma membrane | 51.9 | 55.91 |
| KRH28946 | Soybean | plasma membrane | 53.79 | 54.99 |
| KRH76516 | Soybean | plasma membrane | 54.61 | 54.17 |
| KRH24040 | Soybean | plasma membrane | 19.65 | 29.18 |
| KRH29016 | Soybean | plasma membrane | 19.78 | 29.14 |
| KRH29747 | Soybean | plastid | 20.19 | 26.99 |
| KRH24741 | Soybean | plastid | 20.05 | 26.43 |
Protein Annotations
| Gene3D:1.20.1250.20 | EntrezGene:100790278 | MapMan:24.2.2.1.4 | EMBL:ACUP02003369 | EnsemblPlantsGene:GLYMA_06G000200 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005351 | GO:GO:0005355 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015992 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0035428 | GO:GO:0046323 |
| GO:GO:0055085 | GO:GO:1902600 | GO:GO:1904659 | UniProt:I1K6U5 | InterPro:IPR020846 | EnsemblPlants:KRH51319 |
| ProteinID:KRH51319 | ProteinID:KRH51319.1 | InterPro:MFS_dom | InterPro:MFS_sugar_transport-like | InterPro:MFS_trans_sf | PFAM:PF00083 |
| PRINTS:PR00171 | ScanProsite:PS00216 | ScanProsite:PS00217 | PFscan:PS50850 | PANTHER:PTHR23500 | PANTHER:PTHR23500:SF8 |
| SUPFAM:SSF103473 | InterPro:Sugar/inositol_transpt | InterPro:Sugar_transporter_CS | TMHMM:TMhelix | UniParc:UPI0002339D0D | SEG:seg |
Description
hypothetical protein
Coordinates
chr6:+:16505..22866
Molecular Weight (calculated)
79276.9 Da
IEP (calculated)
4.930
GRAVY (calculated)
0.345
Length
738 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGAVLVAVA AAIGNLLQGW DNATIAGSIL YIKKEFQLEN EPTVEGLIVA MSLIGATVVT TCSGALSDLL GRRPMLIISS MLYFVSSLVM LWSPNVYILL
101: FARLLDGLGI GLAVTLVPLY ISETAPPEIR GLLNTLPQFT GSLGMFFSYC MVFGMSLMKA PSWRIMLGVL SIPSLIFFAL TLLFLPESPR WLVSKGRMLE
201: AKKVLQRLRG REDVSGEMAL LVEGLGVGGD TAIEEYIIGP ANELDEEDQS REKDQIKLYG PEQGQSWVAR PVAGQNSVGL VSRKGSMVNQ SGLVDPLVTL
301: FGSIHEKHPE TGSMRSTLFP HFGSMFSVGG NQPRNEDWDE ESLAREGDDY VSDAAAGDSD DNLQSPLISR QTTSMDKDIT PPAHSNLSSM RQGSLLHGNA
401: GEPTGSTGIG GGWQLAWKWS ERESPDGKKE GGFQRIYLHQ DGGSGSRRGS VVSLPGGDLP TDGEVVQAAA LVSRSALYNK DLMCQRPVGP AMIHPSETIA
501: KGPSWSDLFE PGVKHALIVG VGMQILQQFS GINGVLYYTP QILEQAGVGY LLSSLGLGST SSSFLISAVT TLLMLPCIAI AMRLMDISGR RTLLLSTIPV
601: LIVALLILVL GSLVDLGTTA NASISTISVI VYFCFFVMGF GPIPNILCAE IFPTRVRGLC IAICALTFWI CDIIVTYTLP VMLNSLGLAG VFGIYAVACF
701: IAWVFVFLKV PETKGMPLEV IIEFFSVGAK QVDDAKHN
101: FARLLDGLGI GLAVTLVPLY ISETAPPEIR GLLNTLPQFT GSLGMFFSYC MVFGMSLMKA PSWRIMLGVL SIPSLIFFAL TLLFLPESPR WLVSKGRMLE
201: AKKVLQRLRG REDVSGEMAL LVEGLGVGGD TAIEEYIIGP ANELDEEDQS REKDQIKLYG PEQGQSWVAR PVAGQNSVGL VSRKGSMVNQ SGLVDPLVTL
301: FGSIHEKHPE TGSMRSTLFP HFGSMFSVGG NQPRNEDWDE ESLAREGDDY VSDAAAGDSD DNLQSPLISR QTTSMDKDIT PPAHSNLSSM RQGSLLHGNA
401: GEPTGSTGIG GGWQLAWKWS ERESPDGKKE GGFQRIYLHQ DGGSGSRRGS VVSLPGGDLP TDGEVVQAAA LVSRSALYNK DLMCQRPVGP AMIHPSETIA
501: KGPSWSDLFE PGVKHALIVG VGMQILQQFS GINGVLYYTP QILEQAGVGY LLSSLGLGST SSSFLISAVT TLLMLPCIAI AMRLMDISGR RTLLLSTIPV
601: LIVALLILVL GSLVDLGTTA NASISTISVI VYFCFFVMGF GPIPNILCAE IFPTRVRGLC IAICALTFWI CDIIVTYTLP VMLNSLGLAG VFGIYAVACF
701: IAWVFVFLKV PETKGMPLEV IIEFFSVGAK QVDDAKHN
001: MSGAVLVAIA AAVGNLLQGW DNATIAGAVL YIKKEFNLES NPSVEGLIVA MSLIGATLIT TCSGGVADWL GRRPMLILSS ILYFVGSLVM LWSPNVYVLL
101: LGRLLDGFGV GLVVTLVPIY ISETAPPEIR GLLNTLPQFT GSGGMFLSYC MVFGMSLMPS PSWRLMLGVL FIPSLVFFFL TVFFLPESPR WLVSKGRMLE
201: AKRVLQRLRG REDVSGEMAL LVEGLGIGGE TTIEEYIIGP ADEVTDDHDI AVDKDQIKLY GAEEGLSWVA RPVKGGSTMS VLSRHGSTMS RRQGSLIDPL
301: VTLFGSVHEK MPDTGSMRSA LFPHFGSMFS VGGNQPRHED WDEENLVGEG EDYPSDHGDD SEDDLHSPLI SRQTTSMEKD MPHTAHGTLS TFRHGSQVQG
401: AQGEGAGSMG IGGGWQVAWK WTEREDESGQ KEGGFKRIYL HQEGFPGSRR GSIVSLPGGD GTGEADFVQA SALVSQPALY SKDLLKEHTI GPAMVHPSET
501: TKGSIWHDLH DPGVKRALVV GVGLQILQQF SGINGVLYYT PQILEQAGVG ILLSNMGISS SSASLLISAL TTFVMLPAIA VAMRLMDLSG RRTLLLTTIP
601: ILIASLLVLV ISNLVHMNSI VHAVLSTVSV VLYFCFFVMG FGPAPNILCS EIFPTRVRGI CIAICALTFW ICDIIVTYSL PVLLKSIGLA GVFGMYAIVC
701: CISWVFVFIK VPETKGMPLE VITEFFSVGA RQAEAAKNE
101: LGRLLDGFGV GLVVTLVPIY ISETAPPEIR GLLNTLPQFT GSGGMFLSYC MVFGMSLMPS PSWRLMLGVL FIPSLVFFFL TVFFLPESPR WLVSKGRMLE
201: AKRVLQRLRG REDVSGEMAL LVEGLGIGGE TTIEEYIIGP ADEVTDDHDI AVDKDQIKLY GAEEGLSWVA RPVKGGSTMS VLSRHGSTMS RRQGSLIDPL
301: VTLFGSVHEK MPDTGSMRSA LFPHFGSMFS VGGNQPRHED WDEENLVGEG EDYPSDHGDD SEDDLHSPLI SRQTTSMEKD MPHTAHGTLS TFRHGSQVQG
401: AQGEGAGSMG IGGGWQVAWK WTEREDESGQ KEGGFKRIYL HQEGFPGSRR GSIVSLPGGD GTGEADFVQA SALVSQPALY SKDLLKEHTI GPAMVHPSET
501: TKGSIWHDLH DPGVKRALVV GVGLQILQQF SGINGVLYYT PQILEQAGVG ILLSNMGISS SSASLLISAL TTFVMLPAIA VAMRLMDLSG RRTLLLTTIP
601: ILIASLLVLV ISNLVHMNSI VHAVLSTVSV VLYFCFFVMG FGPAPNILCS EIFPTRVRGI CIAICALTFW ICDIIVTYSL PVLLKSIGLA GVFGMYAIVC
701: CISWVFVFIK VPETKGMPLE VITEFFSVGA RQAEAAKNE
Arabidopsis Description
TMT2TMT2 [Source:UniProtKB/TrEMBL;Acc:A0A178V1T0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.