Factsheet for PGSC0003DMT400038616

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g015150.2.1	Tomato	plasma membrane	97.51	92.75
VIT_01s0010g02910.t01	Wine grape	plasma membrane	77.42	74.47
KRH49459	Soybean	plasma membrane	72.87	70.4
KRH00325	Soybean	plasma membrane	72.14	69.69
AT1G67510.1	Thale cress	plasma membrane	72.43	68.71
Bra004229.1-P	Field mustard	plasma membrane	71.85	68.44
CDX96089	Canola	plasma membrane	71.7	68.3
CDY01814	Canola	plasma membrane	71.7	67.92
KRH65607	Soybean	plasma membrane	69.21	66.39
KRH76022	Soybean	plasma membrane	68.77	65.96
GSMUA_Achr1P13440_001	Banana	plasma membrane	45.16	54.04
TraesCS2B01G465200.1	Wheat	plasma membrane	58.5	52.92
TraesCS2A01G444000.2	Wheat	plasma membrane	58.06	52.66
TraesCS2D01G443200.1	Wheat	plasma membrane	57.92	52.6
Zm00001d024047_P001	Maize	plasma membrane	57.18	51.66
HORVU4Hr1G012420.5	Barley	plasma membrane	54.69	50.89
EES15890	Sorghum	plasma membrane	58.36	50.83
TraesCS4D01G073300.1	Wheat	plasma membrane	55.13	50.61
TraesCS4B01G074700.1	Wheat	plasma membrane	54.99	50.34
Os12t0235700-00	Rice	plasma membrane	57.48	49.94
TraesCS4A01G240200.1	Wheat	plasma membrane	54.84	49.93
Zm00001d004635_P002	Maize	plasma membrane	54.4	49.87
HORVU2Hr1G102790.1	Barley	plasma membrane	42.08	48.64
Os11t0300600-01	Rice	extracellular	39.59	48.47
EER90640	Sorghum	plasma membrane	54.55	48.19
Os11t0300700-01	Rice	nucleus, plastid	11.29	46.95
PGSC0003DMT400033662	Potato	plasma membrane	40.62	44.18
PGSC0003DMT400078542	Potato	plasma membrane	44.57	42.58
GSMUA_Achr6P28540_001	Banana	vacuole	36.8	38.67
TraesCS5A01G147300.1	Wheat	mitochondrion	7.48	35.66
PGSC0003DMT400064235	Potato	plasma membrane	35.63	31.64
Zm00001d036766_P001	Maize	cytosol	9.82	31.46
PGSC0003DMT400066225	Potato	plasma membrane	34.75	30.74
PGSC0003DMT400066550	Potato	endoplasmic reticulum, plasma membrane	12.9	29.04

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.3	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611
InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	UniProt:M1B763
PFAM:PF00069	PFAM:PF08263	PFAM:PF13855	EnsemblPlantsGene:PGSC0003DMG400014917	PGSC:PGSC0003DMG400014917	EnsemblPlants:PGSC0003DMT400038616
PRINTS:PR00019	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27008	PANTHER:PTHR27008:SF9	InterPro:Prot_kinase_dom
SMART:SM00220	SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI000295DEA6
SEG:seg	:	:	:	:	:

Description

Leucine-rich repeat receptor kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400014917]

Coordinates

chr5:+:13160875..13165031

Molecular Weight (calculated)

73653.7 Da

IEP (calculated)

7.167

GRAVY (calculated)

-0.240

Length

682 amino acids

Sequence
(BLAST)

001: MDDGGGGTVF SDWNENDDTP CTWTGISCAN ISGSSEPRVV GITLSGKNLR GYLSSELGTL LYLRRLNLHG NNIYGSIPDP LFNATSLHSI YLYDNNISGI
101: LPPSVCNLPR LQNLDISDNS LSGTFSKDLR NCRQLQRLIL ARNKFSGEIP VGVFPELANL EQLDLSSNLF NGSIPEDIGE LKSLSGTLNL SFNHFSGRIP
201: KSVGDLPLTV SFDLRNNNLS GEIPQTGSFA NQGPTAFLNN PLLCGFPLQK NCKNSSNNST QVQGSSDNEG TNSRKGLKPG FIILICLADA FGVAFIGLVI
301: IYLYWKKKDS GGCSCTGKGK FGGNEKRMLC GFPCINGFPN NDSEVESEKG GGGGASGGGV SGGEGDLVAI DKGFSFELDE LLRASAYVLG KSGLGIVYKV
401: VLGNGIPVAV RRLGEGGEQR YKEFVAEIQA IGRVKHPNVV KLRAYYWAPD EKLLISDFIS NGNLASALHG RNGQPSPSLT WSTRLKIAKG TARGLAYLHE
501: CSPRKFVHGD VKPSNILLDT ELQPYISDFG LNRLINITGN NPSSSGGFMG GALPYLKPAQ PERPNNYRAP EARITGNRPT QKWDVYSFGV VLLELLTGKS
601: PDLSVPTTST STEVPDLVRW VRKGFEEQNP LSDMVEPMLL QEVHAKKEVL AVFHIALACT EADPDIRPRM KTISENIEKV GA

Best Arabidopsis Sequence Match ( AT1G67510.1 )
(BLAST)

001: MILLSLLLHL LLHLLNTSPS LSLSPDGIAL LSLKSAVDHS SSSAFSDWND NDTDPCHWSG ISCMNISDSS TSRVVGISLA GKHLRGYIPS ELGSLIYLRR
101: LNLHNNELYG SIPTQLFNAT SLHSIFLYGN NLSGTLPPSI CKLPKLQNLD LSMNSLSGTL SPDLNKCKQL QRLILSANNF SGEIPGDIWP ELTNLAQLDL
201: SANEFSGEIP KDIGELKSLS GTLNLSFNHL SGQIPNSLGN LPVTVSLDLR NNDFSGEIPQ SGSFSNQGPT AFLNNPKLCG FPLQKTCKDT DENSPGTRKS
301: PENNADSRRG LSTGLIVLIS VADAASVAFI GLVLVYLYWK KKDSEGGCSC TGNAKLGGGS VKGKSCCCIT GFPKEDDSEA EGNERGEGKG DGELVAIDKG
401: FSFELDELLR ASAYVLGKSG LGIVYKVVLG NGVPVAVRRL GEGGEQRYKE FVTEVQAMGK VKHPNVVKLR AYYWAPDEKL LISDFVNNGS LADALRGRNG
501: QPSPSLTWST RIKIAKGAAR GLAYLHECSP RKLVHGDVKP SNILLDSSFT PYISDFGLTR LITITAASAS SNEPSSSSAA GGFLGGALPY TSIKPSDRSN
601: GYKAPEARLP GGRPTQKWDV YSFGVVLMEL LTGKSPDSSP LSSSSTSTVV VEVPDLVKWV RKGFEEETPL SDMVDPMLLQ EVHAKQQVLS VFHLALACTE
701: GDPEVRPRMK NVSENIDKI

Arabidopsis Description

Leucine-rich repeat protein kinase family protein [Source:UniProtKB/TrEMBL;Acc:O64794]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.