Factsheet for PGSC0003DMT400066550

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 1
endoplasmic reticulum 4
extracellular 4
golgi 3
plasma membrane 4
vacuole 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15300.1	PGSC0003DMT400015729	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066225	Potato	plasma membrane	91.75	36.06
Bra011508.1-P	Field mustard	plasma membrane	59.74	24.26
CDX75411	Canola	plasma membrane	59.74	24.26
CDX69035	Canola	plasma membrane	59.41	24.1
AT2G15300.1	Thale cress	plasma membrane	57.1	23.25
AT4G34220.1	Thale cress	plasma membrane	58.09	23.25
GSMUA_Achr9P22590_001	Banana	plasma membrane	50.16	23.03
GSMUA_Achr8P25210_001	Banana	plasma membrane	49.84	22.08
PGSC0003DMT400064235	Potato	plasma membrane	53.8	21.22
Bra039836.1-P	Field mustard	plasma membrane	49.51	20.92
CDY52422	Canola	plasma membrane	49.17	20.69
CDY54466	Canola	plasma membrane	48.84	20.61
GSMUA_Achr4P12930_001	Banana	plasma membrane, vacuole	38.94	20.49
Os09t0110100-01	Rice	plasma membrane	49.51	18.89
GSMUA_Achr4P09420_001	Banana	plasma membrane	41.58	18.45
TraesCS5D01G165400.1	Wheat	plasma membrane	48.84	18.23
TraesCS5A01G160500.1	Wheat	plasma membrane	48.51	18.06
Zm00001d019701_P001	Maize	plasma membrane	48.51	17.8
TraesCS5B01G158000.1	Wheat	plasma membrane	47.52	17.73
EER98554	Sorghum	plasma membrane	49.17	17.65
Zm00001d005298_P001	Maize	mitochondrion, plasma membrane	47.85	17.49
Zm00001d046626_P001	Maize	plasma membrane	47.19	16.96
EER90087	Sorghum	plasma membrane	47.85	16.72
Os06t0638500-00	Rice	plasma membrane	47.85	16.55
GSMUA_Achr3P28250_001	Banana	mitochondrion	31.02	16.18
HORVU7Hr1G116470.2	Barley	plasma membrane	44.88	15.54
TraesCS7B01G441200.1	Wheat	plasma membrane	44.55	15.38
TraesCS7D01G512900.1	Wheat	plasma membrane	43.23	15.06
TraesCS7A01G523900.1	Wheat	plasma membrane	43.23	15.04
PGSC0003DMT400078542	Potato	plasma membrane	33.66	14.29
PGSC0003DMT400033662	Potato	plasma membrane	29.37	14.19
PGSC0003DMT400038616	Potato	mitochondrion	29.04	12.9
Zm00001d008868_P001	Maize	endoplasmic reticulum, extracellular, plastid	0.0	0.0
Zm00001d045902_P001	Maize	cytosol	0.0	0.0
CDY69287	Canola	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611
InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	UniProt:M1CFQ9	PFAM:PF08263
PFAM:PF13855	EnsemblPlantsGene:PGSC0003DMG400025864	PGSC:PGSC0003DMG400025864	EnsemblPlants:PGSC0003DMT400066550	PANTHER:PTHR27008	PANTHER:PTHR27008:SF42
SUPFAM:SSF52058	TMHMM:TMhelix	UniParc:UPI0002969E3B	SEG:seg	:	:

Description

Interleukin-1 receptor-associated kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400025864]

Coordinates

chr1:-:84042272..84043183

Molecular Weight (calculated)

32851.4 Da

IEP (calculated)

4.495

GRAVY (calculated)

0.196

Length

303 amino acids

Sequence
(BLAST)

001: MMTNSDQYYS FWSFGVFFFL SLCPSFGLNI DGTLLLSFKY SVLEDPLSFL DNWDYNDATP CLWTGVTCAP DMFRVISLVL PNSKLIGSIL EELGFIQHLH
101: TIDLSNNFLN GTLPVSLLNA SELQVLSLSN NAISGELTES IGGLKSLKVL NLSVNAFVGN LPQKLSFLQN IKVVSLSKNL FSGGFQFVEV LDLSSNLLNG
201: ALPDNFDGDS LKYLNFSSNK LSGLVSPQFA KKIPANAAID LSFNSLTGEI PESIDLSNQK TEFFAGNTDL CGKPLKKLCT IPSTPSSPPN ITTNPPAIAA
301: IPK

Best Arabidopsis Sequence Match ( AT4G34220.1 )
(BLAST)

001: MTSNRSNLLF SLVLFHFLFV PTQLQALNTD GVLLLTFKYS ILTDPLSVLR NWNYDDATPC LWTGVTCTEL GKPNTPDMFR VTSLVLPNKH LLGSITPDLF
101: SIPYLRILDL SSNFFNGSLP DSVFNATELQ SISLGSNNLS GDLPKSVNSV TNLQLLNLSA NAFTGEIPLN ISLLKNLTVV SLSKNTFSGD IPSGFEAAQI
201: LDLSSNLLNG SLPKDLGGKS LHYLNLSHNK VLGEISPNFA EKFPANATVD LSFNNLTGPI PSSLSLLNQK AESFSGNQEL CGKPLKILCS IPSTLSNPPN
301: ISETTSPAIA VKPRSTAPIN PLTEKPNQTG KSKLKPSTIA AITVADIVGL AFIGLLVLYV YQVRKRRRYP ESSKFSFFKF CLEKNEAKKS KPSTTEVTVP
401: ESPEAKTTCG SCIILTGGRY DETSTSESDV ENQQTVQAFT RTDGGQLKQS SQTQLVTVDG ETRLDLDTLL KASAYILGTT GTGIVYKAVL ENGTAFAVRR
501: IETESCAAAK PKEFEREVRA IAKLRHPNLV RIRGFCWGDD EKLLISDYVP NGSLLCFFTA TKASSSSSSS SSLQNPLTFE ARLKIARGMA RGLSYINEKK
601: QVHGNIKPNN ILLNAENEPI ITDLGLDRLM TPARESHTTG PTSSSPYQPP EWSTSLKPNP KWDVYSFGVI LLELLTSKVF SVDHDIDQFS NLSDSAAEEN
701: GRFLRLIDGA IRSDVARHED AAMACFRLGI ECVSSLPQKR PSMKELVQVL EKICVLV

Arabidopsis Description

Receptor protein kinase-like protein At4g34220 [Source:UniProtKB/Swiss-Prot;Acc:Q94C77]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.