Factsheet for PGSC0003DMT400064235

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 10
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g092940.2.1	Tomato	plasma membrane	95.57	95.57
Zm00001d008868_P001	Maize	endoplasmic reticulum, extracellular, plastid	5.86	64.29
VIT_07s0129g01070.t01	Wine grape	plasma membrane	65.36	64.28
KRH04528	Soybean	plasma membrane	59.38	59.92
Zm00001d045902_P001	Maize	cytosol	8.59	58.93
KRH57974	Soybean	plasma membrane	58.85	58.7
CDX89556	Canola	plasma membrane	57.81	58.04
CDY38934	Canola	plasma membrane	57.55	57.7
Bra032175.1-P	Field mustard	plasma membrane	57.29	57.44
AT2G23300.1	Thale cress	plasma membrane	57.81	57.44
CDX69286	Canola	plasma membrane	55.08	56.1
CDX75634	Canola	plasma membrane	55.34	55.99
Bra011747.1-P	Field mustard	plasma membrane	55.08	55.58
AT4G37250.1	Thale cress	plasma membrane	55.21	55.21
Bra012148.1-P	Field mustard	plasma membrane	52.6	54.67
PGSC0003DMT400066550	Potato	endoplasmic reticulum, plasma membrane	21.22	53.8
AT5G67280.1	Thale cress	plasma membrane	51.95	53.13
GSMUA_Achr4P12930_001	Banana	plasma membrane, vacuole	39.58	52.78
PGSC0003DMT400066225	Potato	plasma membrane	52.73	52.53
GSMUA_Achr8P25210_001	Banana	plasma membrane	46.74	52.49
GSMUA_Achr9P22590_001	Banana	plasma membrane	43.49	50.61
GSMUA_Achr3P28250_001	Banana	mitochondrion	38.15	50.43
GSMUA_Achr4P09420_001	Banana	plasma membrane	40.76	45.83
Os09t0110100-01	Rice	plasma membrane	47.14	45.59
TraesCS5A01G160500.1	Wheat	plasma membrane	45.31	42.75
TraesCS5D01G165400.1	Wheat	plasma membrane	45.18	42.73
TraesCS5B01G158000.1	Wheat	plasma membrane	45.18	42.73
EER90087	Sorghum	plasma membrane	47.14	41.75
EER98554	Sorghum	plasma membrane	45.83	41.71
Zm00001d005298_P001	Maize	mitochondrion, plasma membrane	44.79	41.5
Os06t0638500-00	Rice	plasma membrane	46.88	41.1
Zm00001d046626_P001	Maize	plasma membrane	44.4	40.45
Zm00001d019701_P001	Maize	plasma membrane	43.49	40.44
TraesCS7D01G512900.1	Wheat	plasma membrane	44.53	39.31
TraesCS7A01G523900.1	Wheat	plasma membrane	44.27	39.04
HORVU7Hr1G116470.2	Barley	plasma membrane	43.88	38.51
TraesCS7B01G441200.1	Wheat	plasma membrane	44.01	38.5
CDY01423	Canola	plasma membrane	53.12	38.38
PGSC0003DMT400078542	Potato	plasma membrane	35.55	38.24
CDY12827	Canola	plasma membrane	52.47	37.91
PGSC0003DMT400038616	Potato	mitochondrion	31.64	35.63
PGSC0003DMT400033662	Potato	plasma membrane	27.6	33.81

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102603563	MapMan:18.4.1.3	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
UniProt:M1CBZ5	PFAM:PF00069	PFAM:PF08263	PFAM:PF13855	EnsemblPlantsGene:PGSC0003DMG400024954	PGSC:PGSC0003DMG400024954
EnsemblPlants:PGSC0003DMT400064235	PRINTS:PR00019	PFscan:PS50011	PANTHER:PTHR27008	PANTHER:PTHR27008:SF35	InterPro:Prot_kinase_dom
SUPFAM:SSF52058	SUPFAM:SSF56112	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002965326	RefSeq:XP_006339847.1
SEG:seg	:	:	:	:	:

Description

LIM domain kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400024954]

Coordinates

chr2:+:43326481..43329989

Molecular Weight (calculated)

83535.3 Da

IEP (calculated)

6.842

GRAVY (calculated)

-0.256

Length

768 amino acids

Sequence
(BLAST)

001: MKFQTFDLVL LLFLLLEYQA SGLNNDGLLL LTFKYNILSD PLSVLQNWNS WDDTPCSWKG VGCGNPNASD PNLRVTNLSL PNSLLLGSIP SSLGMIQYLT
101: NLDLSNNSIN GSIPLTLFSA PELQRLDFSN NRISGQLPEL VGHLNNLQFL NLSGNALTGR LPANLGNLTV VSLKDNYFFG AVPFGFDSVQ VLDLSSNLIN
201: GSLPPNFGGS NLRYFNASFN KLSGDIPPEF GSKIPPNATI DLSYNNFSGA IPESIVFINQ NRKAFSGNPE LCGAPLKNLC PIPSTVTTLP NSPEPTSSPA
301: IAAIPKPTDS NPAAESPKEG KNGLRTGTII GIIAGDIAAV GVLALIFMYV YRAKKKKRNI ENSIKKEAET AKDFDWASSA SSEEYNWLRS WTCLKKQRHG
401: DDDELSEASH SESENSQLGH PQQNHVHTEQ KTGELVTVDG ERELELETLL KASAYILGAS GSSIMYKAVL EDGTTLAVRR IGESGVERFK DFENQVKVIA
501: KLVHTNLVKI RGFYWGAEEK LVIYDFVPNG SLANARNRKA GSSPCHVPWE IRLKVAKGVA RGLTYIHEKK HVHGNLKPSN ILLGEDMEPK IGDFGIERLV
601: TGDSSHKTYG SARNFGSKRS TASRESFQDF TSGPTPTPSP SALGISPYHA PESLRSLKPN PKWDVFSFGV VLLELLTGKV IVSDEMGPAS VIGATTSAEE
701: EKSKVLRLAD VAIRADVEGK EDALLALMKV GYSCISPTPQ KRPGMREVVQ ALEKFPTNST SSPYYYGP

Best Arabidopsis Sequence Match ( AT4G37250.1 )
(BLAST)

001: MRMELISVIF FFFCSVLSSS ALNSDGLVLM KFKSSVLVDP LSLLQTWNYK HESPCSWRGI SCNNDSKVLT LSLPNSQLLG SIPSDLGSLL TLQSLDLSNN
101: SFNGPLPVSF FNARELRFLD LSSNMISGEI PSAIGDLHNL LTLNLSDNAL AGKLPTNLAS LRNLTVVSLE NNYFSGEIPG GWRVVEFLDL SSNLINGSLP
201: PDFGGYSLQY LNVSFNQISG EIPPEIGVNF PRNVTVDLSF NNLTGPIPDS PVFLNQESNF FSGNPGLCGE PTRNPCLIPS SPSIVSEADV PTSTPAIAAI
301: PNTIGSNPVT DPNSQQTDPN PRTGLRPGVI IGIVVGDIAG IGILAVIFLY IYRCKKNKIV DNNNNDKQRT ETDTITLSTF SSSSSSPEES RRFRKWSCLR
401: KDPETTPSEE EDEDDEDEES GYNANQRSGD NKLVTVDGEK EMEIETLLKA SAYILGATGS SIMYKAVLED GRVFAVRRLG ENGLSQRRFK DFEPHIRAIG
501: KLVHPNLVRL CGFYWGTDEK LVIYDFVPNG SLVNPRYRKG GGSSSPYHLP WETRLKIAKG IARGLAYLHE KKHVHGNLKP SNILLGHDME PKIGDFGLER
601: LLTGETSYIR AGGSSRIFSS KRYTTSSREF SSIGPTPSPS PSSVGAMSPY CAPESFRSLK PSPKWDVYGF GVILLELLTG KIVSVEEIVL GNGLTVEDGH
701: RAVRMADVAI RGELDGKQEF LLDCFKLGYS CASPVPQKRP TMKESLAVLE RFHPNSSVIK SSSFHYGH

Arabidopsis Description

Probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Source:UniProtKB/Swiss-Prot;Acc:C0LGS3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.