Factsheet for Solyc01g081270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

cytosol 5
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 29145071

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004540	Potato	cytosol	90.13	89.33
VIT_15s0024g01630.t01	Wine grape	cytosol	64.13	67.45
VIT_15s0024g01540.t01	Wine grape	cytosol	66.37	64.91
VIT_00s0153g00070.t01	Wine grape	cytosol	66.37	64.07
VIT_00s0153g00050.t01	Wine grape	endoplasmic reticulum	63.68	63.11
VIT_15s0024g01650.t01	Wine grape	cytosol	63.68	63.11
Solyc12g036560.1.1	Tomato	cytosol	28.7	58.18
Solyc01g081310.2.1	Tomato	cytosol	52.02	51.56
Os12t0123200-01	Rice	cytosol	45.74	50.25
Solyc09g063150.2.1	Tomato	cytosol	47.53	48.18
Solyc06g069040.2.1	Tomato	cytosol	48.43	47.79
VIT_15s0107g00150.t01	Wine grape	endoplasmic reticulum, plastid	57.85	47.78
Solyc09g011570.2.1	Tomato	cytosol	44.39	47.14
Solyc09g091130.2.1	Tomato	cytosol	46.64	46.43
Solyc09g011580.2.1	Tomato	cytosol, plastid	44.84	46.08
Solyc09g011620.1.1	Tomato	cytosol	44.39	46.05
Solyc09g011640.2.1	Tomato	cytosol	45.29	45.91
Solyc08g062570.1.1	Tomato	cytosol	28.25	45.65
Solyc09g011590.2.1	Tomato	cytosol	44.39	45.62
Solyc09g011630.2.1	Tomato	cytosol, mitochondrion	44.39	45.41
Solyc09g011550.2.1	Tomato	cytosol	44.39	45.21
Solyc09g011500.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.39	44.59
Solyc09g011600.2.1	Tomato	cytosol	43.05	44.24
Zm00001d052384_P001	Maize	cytosol	29.15	43.92
Solyc01g099590.2.1	Tomato	cytosol	43.95	43.75
TraesCS5A01G143500.1	Wheat	cytosol	45.29	43.35
Solyc10g084960.1.1	Tomato	cytosol	42.6	42.99
Solyc09g011560.2.1	Tomato	cytosol	41.7	42.86
Solyc12g097080.1.1	Tomato	cytosol, endoplasmic reticulum	42.15	42.53
Solyc09g011490.2.1	Tomato	cytosol	41.26	42.01
Solyc09g011520.2.1	Tomato	cytosol	41.7	41.33
Solyc01g086680.2.1	Tomato	cytosol	40.81	40.62
Solyc09g011540.2.1	Tomato	cytosol	40.36	40.54
Solyc09g011510.2.1	Tomato	cytosol	26.91	37.97
Solyc03g116120.1.1	Tomato	cytosol	38.12	37.95
Solyc09g091140.2.1	Tomato	cytosol	37.67	37.67
Solyc09g011650.2.1	Tomato	cytosol	36.32	36.65
Solyc03g116130.1.1	Tomato	cytosol	38.12	36.48
Solyc12g062730.1.1	Tomato	cytosol	30.49	33.66
Solyc07g021460.1.1	Tomato	cytosol	27.8	33.51
TraesCS5B01G142500.1	Wheat	cytosol	44.84	33.33
TraesCS5D01G148500.2	Wheat	cytosol	30.49	32.54
HORVU5Hr1G045850.3	Barley	cytosol	45.29	29.97

Protein Annotations

Gene3D:1.20.1050.10	MapMan:18.8.1.4	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006749	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009407	GO:GO:0009987
GO:GO:0016740	GO:GO:0019748	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N
InterPro:IPR004045	InterPro:IPR010987	UniProt:K4AY19	PFAM:PF00043	PFAM:PF02798	PFscan:PS50404
PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF491	SUPFAM:SSF47616	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc01g081270.2
EnsemblPlants:Solyc01g081270.2.1	InterPro:Thioredoxin-like_sf	UniParc:UPI0002762982	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:80516231..80517572

Molecular Weight (calculated)

25950.5 Da

IEP (calculated)

5.400

GRAVY (calculated)

-0.160

Length

223 amino acids

Sequence
(BLAST)

001: MADEVKLYRT WSSPFGLRIV WALHIKGIEY EAIFEDLSQK SPQLLQYNPV HKKIPVLVHK GKPICESLVI LEYIDETWKE TAPLLPQDPY EKAMARFWAK
101: FVEDKLLPSV WSIFTEQGYD AKKEAFVPAV QNLEIIEEQL KEKKFFGGES IGYVDLVLGW MAYLLDVFEE VLDLKLFDAD KFPLLSGWMK NFCDAPAIKQ
201: HLPPRDKLVT KFQLLHEKFQ TAN

Best Arabidopsis Sequence Match ( AT2G29480.1 )
(BLAST)

001: MAKKEESVKL LGFWISPFSR RVEMALKLKG VPYEYLEEDL PKKSTLLLEL NPVHKKVPVL VHNDKLLSES HVILEYIDQT WNNNPILPHD PYEKAMVRFW
101: AKFVDEQILP VGFMPLVKAE KGIDVAIEEI REMLMFLEKE VTGKDFFGGK TIGFLDMVAG SMIPFCLARA WECLGIDMTP EDTFPELNRW IKNLNEVEIV
201: RECIPPKEKH IERMKKIIER AKSTF

Arabidopsis Description

GSTU2Glutathione S-transferase U2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW29]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.