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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, peroxisome, nucleus, cytosol

Predictor Summary:
  • plastid 2
  • peroxisome 1
  • cytosol 2
  • mitochondrion 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, nucleus, peroxisome
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:peroxisome
Plant-mPloc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400005250 Potato cytosol, nucleus, peroxisome 89.21 94.43
VIT_10s0116g00410.t01 Wine grape cytosol, nucleus, peroxisome 63.42 70.06
Solyc10g005360.2.1 Tomato cytosol 51.32 67.47
GSMUA_Achr9P11880_001 Banana cytosol, nucleus, peroxisome 45.26 52.76
Solyc04g008670.1.1 Tomato golgi 47.89 50.98
GSMUA_Achr6P21950_001 Banana cytosol, nucleus, peroxisome 43.16 47.26
GSMUA_Achr8P03660_001 Banana endoplasmic reticulum, golgi 45.0 40.91
Solyc06g082030.2.1 Tomato cytosol 28.95 31.16
Solyc01g094590.2.1 Tomato cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole 17.37 30.41
Solyc03g025490.2.1 Tomato plastid 24.47 29.06
Protein Annotations
Gene3D:2.60.120.330MapMan:50.1.13InterPro:DIOX_NGO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0008150GO:GO:0008152GO:GO:0016491GO:GO:0046872GO:GO:0055114InterPro:IPNS-like
InterPro:IPR005123InterPro:IPR027443UniProt:K4B9N3InterPro:Oxoglu/Fe-dep_dioxygenasePFAM:PF03171PFAM:PF14226
PFscan:PS51471PANTHER:PTHR10209PANTHER:PTHR10209:SF386SUPFAM:SSF51197EnsemblPlantsGene:Solyc02g080120.1EnsemblPlants:Solyc02g080120.1.1
UniParc:UPI0002768E1F:::::
Description
No Description!
Coordinates
chr2:+:44432042..44436667
Molecular Weight (calculated)
44117.7 Da
IEP (calculated)
8.152
GRAVY (calculated)
-0.488
Length
380 amino acids
Sequence
(BLAST)
001: MYLATSTSQF LLCFPLSGHY GKIMVKSTNL SQQPNQKISR DDESADPPFE ETYKKLFDDI RIGKASSKIN YENLFVVEEC ELPLIDLEQL KGREFEREEC
101: KRKIAQASQE WGFFQVVNHG VSQDVLLQMR KEQMKLFKKP FHEKMNDRQL NFSVGSYRWG TPSATCLQQL SWSEAFHVPL TDISNSNHHP TTLSSTMEQF
201: ATTISELAHD LARILSERMG YKSKYFRETC MPHTCYVRMN RYPACPISPQ VFGLMPHTDS DFLTILHQDE IGGLQLVRDG KWISVKPNPQ ALIINIGDLF
301: QAWSNGVYKS VEHRVVTNKA KERFSTAFFL CPSYDTEIRS CFEPSVYKRF TFREFRQQVQ EDVKKYGYKV GLPRFLVSTH
Best Arabidopsis Sequence Match ( AT4G21200.1 )
(BLAST)
001: MDPPFNEIYN NLLYNQITKK DNDVSEIPFS FSVTAVVEEV ELPVIDVSRL IDGAEEEREK CKEAIARASR EWGFFQVINH GISMDVLEKM RQEQIRVFRE
101: PFDKKSKSEK FSAGSYRWGT PSATSIRQLS WSEAFHVPMT DISDNKDFTT LSSTMEKFAS ESEALAYMLA EVLAEKSGQN SSFFKENCVR NTCYLRMNRY
201: PPCPKPSEVY GLMPHTDSDF LTILYQDQVG GLQLIKDNRW IAVKPNPKAL IINIGDLFQA WSNGMYKSVE HRVMTNPKVE RFSTAYFMCP SYDAVIECSS
301: DRPAYRNFSF REFRQQVQED VKKFGFKVGL PRFLNHVY
Arabidopsis Description
GA2OX8Gibberellin 2-beta-dioxygenase 8 [Source:UniProtKB/Swiss-Prot;Acc:O49561]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.