Factsheet for Solyc03g025490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040854	Potato	cytosol, plastid	96.88	97.48
VIT_16s0050g00640.t01	Wine grape	nucleus, peroxisome, vacuole	67.81	66.98
Bra019310.1-P	Field mustard	cytosol	36.88	63.78
GSMUA_Achr1P03100_001	Banana	cytosol	60.31	60.69
Solyc01g094590.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	38.75	57.14
AT4G23340.1	Thale cress	cytosol, nucleus, peroxisome	57.5	56.79
CDX94181	Canola	cytosol, nucleus, peroxisome	57.5	56.62
CDY10932	Canola	cytosol, nucleus, peroxisome	57.5	56.62
Solyc06g082030.2.1	Tomato	cytosol	28.12	25.5
Solyc04g008670.1.1	Tomato	golgi	28.12	25.21
Solyc02g080120.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	29.06	24.47
Solyc10g005360.2.1	Tomato	cytosol	21.25	23.53

Protein Annotations

Gene3D:2.60.120.330	MapMan:50.1.13	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009653	GO:GO:0009987	GO:GO:0016049
GO:GO:0016491	GO:GO:0030154	GO:GO:0040007	GO:GO:0046872	GO:GO:0048767	GO:GO:0055114
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:K4BF22	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF212	SUPFAM:SSF51197	EnsemblPlantsGene:Solyc03g025490.2
EnsemblPlants:Solyc03g025490.2.1	UniParc:UPI0002768C92	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:2891153..2892573

Molecular Weight (calculated)

36202.4 Da

IEP (calculated)

6.708

GRAVY (calculated)

-0.235

Length

320 amino acids

Sequence
(BLAST)

001: MSKSQTSVKL PIFDISRPLS SSNSLKSLSL ACKEWGFFHI SNHGIPRDLC KQLRFLSNQI FDLPCDVKLN AGPLSNIRTY TPHFIASPFF ESLRVSGPDF
101: FASAQSTSQA LINQPIPEFS HAMEVYGRKM VEVSKSIVEV ILMSLGPEFE RKFASEFKNC HGYLRVNSYT PPESTDDVQE EEEVEGLGMH TDMSCITIVY
201: QDEVGGLQVR SKEGKWMDID PCQDTLVVNI GDLLQAWSNG KLRSSEHRVV LKEPVSRFSI AFFWCFEDEK LIVAPQEIVG KGNLKVYKPF VCADYLKFRE
301: SNEKGKFEKV GFTVKHFAAK

Best Arabidopsis Sequence Match ( AT4G23340.1 )
(BLAST)

001: MSELHSSLQL PVLDLTQPIE SSILSSLSEA CKEWGFFYVT NHGISKEMFS KICSLSRDVF KAPLESKLKL GPISYTPRYI ASPYFESLVV SGPDFSDSAK
101: ASADVLFQDH HKPELRETMQ EYGAKMAELS KRLIKILLMM TLGDETGKRL YQTDFSNCHG YLRLVNYTPP HDVEKQEELV EGLGMHTDMS CITIVYQDSV
201: GGLQMRSKEG KWIDINPCND FLVVNIGDLM QAWSNGRLRS SEHRVVLRKL VNRVSLAFFL CFEDEKVILA PQEIVGEGKQ RSYKSFKCSE YLKFRQSNEE
301: GKFEKIGFTV KDFAGLKLAQ PDDP

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JNI3]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.