Factsheet for GSMUA_Achr1P03100_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65048	Soybean	cytosol, nucleus, peroxisome	65.41	65.2
VIT_15s0046g02550.t01	Wine grape	cytosol, nucleus, peroxisome	64.47	62.5
KRH40458	Soybean	cytosol, nucleus, peroxisome	62.58	62.38
VIT_02s0025g03440.t01	Wine grape	cytosol, nucleus, peroxisome	62.26	61.68
PGSC0003DMT400000488	Potato	cytosol	61.32	60.75
VIT_16s0050g00640.t01	Wine grape	nucleus, peroxisome, vacuole	61.64	60.49
Solyc03g025490.2.1	Tomato	plastid	60.69	60.31
PGSC0003DMT400040854	Potato	cytosol, plastid	60.06	60.06
Bra019310.1-P	Field mustard	cytosol	33.65	57.84
CDY56648	Canola	cytosol, nucleus, peroxisome	57.86	57.14
Bra022544.1-P	Field mustard	cytosol, nucleus, peroxisome	57.86	57.14
CDX91575	Canola	cytosol, nucleus, peroxisome	56.92	56.21
CDX94181	Canola	cytosol, nucleus, peroxisome	56.6	55.38
Solyc01g094590.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	37.74	55.3
CDY10932	Canola	cytosol, nucleus, peroxisome	56.29	55.08
AT4G23340.1	Thale cress	cytosol, nucleus, peroxisome	55.97	54.94
AT5G51310.1	Thale cress	cytosol, nucleus, peroxisome	55.97	54.77
KRH40460	Soybean	cytosol	22.96	45.91
GSMUA_Achr9P11880_001	Banana	cytosol, nucleus, peroxisome	30.82	30.06
GSMUA_Achr6P21950_001	Banana	cytosol, nucleus, peroxisome	30.82	28.24
GSMUA_Achr9P21260_001	Banana	cytosol	28.3	27.19
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	29.25	27.03
GSMUA_Achr8P03660_001	Banana	endoplasmic reticulum, golgi	30.82	23.45
GSMUA_Achr10P...	Banana	mitochondrion	25.79	22.78

Protein Annotations

Gene3D:2.60.120.330	MapMan:50.1.13	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr1G03100_001
EnsemblPlants:GSMUA_Achr1P03100_001	EnsemblPlants:GSMUA_Achr1T03100_001	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M0RWL8
InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF212
SUPFAM:SSF51197	UniParc:UPI0002952836	:	:	:	:

Description

Putative Gibberellin 3-beta-dioxygenase 4 [Source:GMGC_GENE;Acc:GSMUA_Achr1G03100_001]

Coordinates

chr1:+:2492380..2493414

Molecular Weight (calculated)

35800.7 Da

IEP (calculated)

5.397

GRAVY (calculated)

-0.160

Length

318 amino acids

Sequence
(BLAST)

001: MSEQTSLQLP VLDISQPVLT TSLSLLYQAC KGWGFFYITN HGINKDLYDH LRALAHQAFN LPLDAKLKIG PLTAMGTYTP HFIASPFFES LRVSGPNYLA
101: SAKGSSDAIF EQPNVEFCHI LQQYGEAMVD LSRRILAILL ICLGDGIETK YYDSEFSACH GYLRINNYSR PEESSMDEVE GLGMHTDMSC ITILYPDEMG
201: GLQVRSKEGK WVDIMPIKGA LVVNIGDLLQ AWSNGRLRSS EHRVVLKQTA NRFSLAFFWC FEDEKVVAAP EEVVGDGGKR IYRPFVCRDY IKFRENSERG
301: RFDKVGYTVD DFAATQDA

Best Arabidopsis Sequence Match ( AT4G23340.1 )
(BLAST)

001: MSELHSSLQL PVLDLTQPIE SSILSSLSEA CKEWGFFYVT NHGISKEMFS KICSLSRDVF KAPLESKLKL GPISYTPRYI ASPYFESLVV SGPDFSDSAK
101: ASADVLFQDH HKPELRETMQ EYGAKMAELS KRLIKILLMM TLGDETGKRL YQTDFSNCHG YLRLVNYTPP HDVEKQEELV EGLGMHTDMS CITIVYQDSV
201: GGLQMRSKEG KWIDINPCND FLVVNIGDLM QAWSNGRLRS SEHRVVLRKL VNRVSLAFFL CFEDEKVILA PQEIVGEGKQ RSYKSFKCSE YLKFRQSNEE
301: GKFEKIGFTV KDFAGLKLAQ PDDP

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JNI3]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.