Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022544.1-P | Field mustard | cytosol, nucleus, peroxisome | 87.69 | 88.51 |
| CDY56648 | Canola | cytosol, nucleus, peroxisome | 87.69 | 88.51 |
| CDX91575 | Canola | cytosol, nucleus, peroxisome | 87.38 | 88.2 |
| GSMUA_Achr1P03100_001 | Banana | cytosol | 54.77 | 55.97 |
| AT4G23340.1 | Thale cress | cytosol, nucleus, peroxisome | 52.62 | 52.78 |
| AT4G21200.1 | Thale cress | cytosol, nucleus, peroxisome | 27.08 | 26.04 |
| AT1G50960.1 | Thale cress | plastid | 25.23 | 24.4 |
| AT3G47190.1 | Thale cress | cytosol | 21.54 | 21.15 |
| AT5G58660.1 | Thale cress | cytosol, nucleus, peroxisome | 22.77 | 21.02 |
Protein Annotations
| Gene3D:2.60.120.330 | MapMan:50.1.13 | EntrezGene:835205 | UniProt:A0A178UK73 | ProteinID:AED96066.1 | ArrayExpress:AT5G51310 |
| EnsemblPlantsGene:AT5G51310 | RefSeq:AT5G51310 | TAIR:AT5G51310 | RefSeq:AT5G51310-TAIR-G | EnsemblPlants:AT5G51310.1 | TAIR:AT5G51310.1 |
| ProteinID:BAB10331.1 | InterPro:DIOX_N | UniProt:F4KBY0 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016049 |
| GO:GO:0016491 | GO:GO:0030154 | GO:GO:0040007 | GO:GO:0046872 | GO:GO:0048767 | GO:GO:0051213 |
| GO:GO:0055114 | InterPro:IPNS-like | InterPro:IPR005123 | InterPro:IPR027443 | RefSeq:NP_199944.2 | ProteinID:OAO94426.1 |
| InterPro:Oxoglu/Fe-dep_dioxygenase | PFAM:PF03171 | PFAM:PF14226 | PO:PO:0009005 | PRINTS:PR00682 | PFscan:PS51471 |
| PANTHER:PTHR10209 | PANTHER:PTHR10209:SF378 | SUPFAM:SSF51197 | UniParc:UPI0001E93052 | : | : |
Description
Gibberellin 20-oxidase-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4KBY0]
Coordinates
chr5:-:20852712..20854812
Molecular Weight (calculated)
37126.6 Da
IEP (calculated)
4.908
GRAVY (calculated)
-0.504
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLELPVFDI SKPLSESSLT SLQDACKEWG FFYVTNHGVS RDMYKKLRRF STGVFELEDE EKMKMGASNY TPRFIASPFF ESLRVSGPDF YASAKSSVDA
101: FSDQATDEEF SGLMKEYGEK MTKLCEKIMK AILSSFGDDL HHKYYESEFG NCHGYFRINN YTIPSDQEDD HHNGDEQDLI EGLGMHTDMS CITIVDQDDI
201: GGLQVRTRDG IGLMDINPKD EALVVNVGDL LHAWTNGRLR SSQHRVILKR RGFVGNRFSL AFFWCFDDGK VVFAPDEVVG GCEGMRVFRS FKCGDYLRFR
301: ESNEKGKFEK VGDTVEDFAR IEDRR
101: FSDQATDEEF SGLMKEYGEK MTKLCEKIMK AILSSFGDDL HHKYYESEFG NCHGYFRINN YTIPSDQEDD HHNGDEQDLI EGLGMHTDMS CITIVDQDDI
201: GGLQVRTRDG IGLMDINPKD EALVVNVGDL LHAWTNGRLR SSQHRVILKR RGFVGNRFSL AFFWCFDDGK VVFAPDEVVG GCEGMRVFRS FKCGDYLRFR
301: ESNEKGKFEK VGDTVEDFAR IEDRR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.