Factsheet for Bra022544.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 3
peroxisome 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56648	Canola	cytosol, nucleus, peroxisome	100.0	100.0
AT5G51310.1	Thale cress	cytosol, nucleus, peroxisome	88.51	87.69
GSMUA_Achr1P03100_001	Banana	cytosol	57.14	57.86
Bra019310.1-P	Field mustard	cytosol	31.68	55.14
Bra020890.1-P	Field mustard	cytosol, nucleus, peroxisome	27.33	26.04
Bra038780.1-P	Field mustard	cytosol	26.09	24.85
Bra002628.1-P	Field mustard	cytosol, nucleus, peroxisome	9.32	23.62
Bra020362.1-P	Field mustard	cytosol	22.05	20.4
Bra013512.1-P	Field mustard	cytosol	15.84	20.32
Bra030461.1-P	Field mustard	plastid	26.09	11.17

Protein Annotations

Gene3D:2.60.120.330	MapMan:50.1.13	EnsemblPlantsGene:Bra022544	EnsemblPlants:Bra022544.1	EnsemblPlants:Bra022544.1-P	InterPro:DIOX_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009653	GO:GO:0009987	GO:GO:0016049	GO:GO:0016491	GO:GO:0030154	GO:GO:0040007
GO:GO:0046872	GO:GO:0048767	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443
UniProt:M4E196	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471
PANTHER:PTHR10209	PANTHER:PTHR10209:SF378	SUPFAM:SSF51197	UniParc:UPI00025471B2	SEG:seg	:

Description

AT5G51310 (E=7e-102) | gibberellin 20-oxidase-related

Coordinates

chrA02:+:9132737..9134622

Molecular Weight (calculated)

36748.2 Da

IEP (calculated)

4.970

GRAVY (calculated)

-0.467

Length

322 amino acids

Sequence
(BLAST)

001: MSVELPVFDI SKPLNESSLT SLQDACKEWG FFYVTNHGIS GDMYKKLRQF SGGIFGLRDE EKMKMGASNY TPRFIASPFF ESLRVSGPDF YASAKSSIDA
101: FSDQATDEEF SELMKEYGEK MTELCEKILK AILSSFGEDL HHKYYKSEFG NCHGYFRINN YTIPLEQDHQ EDNVDLLEGL GMHTDMSCIT IVDQDDIGGL
201: QVRTRDGLGL MDINPKDEAL VVNVGDLLHA WTNGRLRSSQ HRVVLKRHSF VDNRFSLAFF WCFEDQKVVF APDEVVGGGE GGRVFRSFKC GDYLRFRENI
301: EKGKFEKVGH TVEDFARTED RN

Best Arabidopsis Sequence Match ( AT5G51310.1 )
(BLAST)

001: MSLELPVFDI SKPLSESSLT SLQDACKEWG FFYVTNHGVS RDMYKKLRRF STGVFELEDE EKMKMGASNY TPRFIASPFF ESLRVSGPDF YASAKSSVDA
101: FSDQATDEEF SGLMKEYGEK MTKLCEKIMK AILSSFGDDL HHKYYESEFG NCHGYFRINN YTIPSDQEDD HHNGDEQDLI EGLGMHTDMS CITIVDQDDI
201: GGLQVRTRDG IGLMDINPKD EALVVNVGDL LHAWTNGRLR SSQHRVILKR RGFVGNRFSL AFFWCFDDGK VVFAPDEVVG GCEGMRVFRS FKCGDYLRFR
301: ESNEKGKFEK VGDTVEDFAR IEDRR

Arabidopsis Description

Gibberellin 20-oxidase-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4KBY0]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.