CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 3
peroxisome 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022544.1-P	Field mustard	cytosol, nucleus, peroxisome	100.0	100.0
CDX91575	Canola	cytosol, nucleus, peroxisome	95.96	95.96
AT5G51310.1	Thale cress	cytosol, nucleus, peroxisome	88.51	87.69
GSMUA_Achr1P03100_001	Banana	cytosol	57.14	57.86
CDX94181	Canola	cytosol, nucleus, peroxisome	52.8	52.31
CDY10932	Canola	cytosol, nucleus, peroxisome	52.17	51.69
CDY47108	Canola	cytosol, peroxisome, plastid	16.77	29.35
CDX76423	Canola	cytosol, peroxisome, plastid	16.77	29.35
CDY35579	Canola	cytosol, nucleus, peroxisome	20.5	26.51
CDX94029	Canola	cytosol	27.02	25.74
CDX82811	Canola	cytosol, nucleus, peroxisome	26.71	25.44
CDX79045	Canola	cytosol, nucleus, peroxisome	26.71	25.44
CDY52119	Canola	cytosol, nucleus, peroxisome	9.32	23.62
CDX80345	Canola	cytosol, nucleus, peroxisome	9.01	22.83
CDY32695	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	14.29	22.55
CDY47111	Canola	cytosol	10.56	20.99
CDY71106	Canola	cytosol	10.56	20.73
CDY02826	Canola	cytosol	22.36	19.0
CDY35580	Canola	plastid	3.42	17.19
CDY29619	Canola	plastid	26.09	11.43

Protein Annotations

Gene3D:2.60.120.330	MapMan:50.1.13	GO:A0A078J0T6	UniProt:A0A078J0T6	EnsemblPlants:CDY56648	ProteinID:CDY56648
ProteinID:CDY56648.1	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00019878001	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682
PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF378	SUPFAM:SSF51197	UniParc:UPI00025471B2	SEG:seg

Description

BnaA02g11310DBnaA02g11310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0T6]

Coordinates

chrLK033508:-:4105..5990

Molecular Weight (calculated)

36748.2 Da

IEP (calculated)

4.970

GRAVY (calculated)

-0.467

Length

322 amino acids

Sequence
(BLAST)

001: MSVELPVFDI SKPLNESSLT SLQDACKEWG FFYVTNHGIS GDMYKKLRQF SGGIFGLRDE EKMKMGASNY TPRFIASPFF ESLRVSGPDF YASAKSSIDA
101: FSDQATDEEF SELMKEYGEK MTELCEKILK AILSSFGEDL HHKYYKSEFG NCHGYFRINN YTIPLEQDHQ EDNVDLLEGL GMHTDMSCIT IVDQDDIGGL
201: QVRTRDGLGL MDINPKDEAL VVNVGDLLHA WTNGRLRSSQ HRVVLKRHSF VDNRFSLAFF WCFEDQKVVF APDEVVGGGE GGRVFRSFKC GDYLRFRENI
301: EKGKFEKVGH TVEDFARTED RN

Best Arabidopsis Sequence Match ( AT5G51310.1 )
(BLAST)

001: MSLELPVFDI SKPLSESSLT SLQDACKEWG FFYVTNHGVS RDMYKKLRRF STGVFELEDE EKMKMGASNY TPRFIASPFF ESLRVSGPDF YASAKSSVDA
101: FSDQATDEEF SGLMKEYGEK MTKLCEKIMK AILSSFGDDL HHKYYESEFG NCHGYFRINN YTIPSDQEDD HHNGDEQDLI EGLGMHTDMS CITIVDQDDI
201: GGLQVRTRDG IGLMDINPKD EALVVNVGDL LHAWTNGRLR SSQHRVILKR RGFVGNRFSL AFFWCFDDGK VVFAPDEVVG GCEGMRVFRS FKCGDYLRFR
301: ESNEKGKFEK VGDTVEDFAR IEDRR

Arabidopsis Description

Gibberellin 20-oxidase-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4KBY0]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.