CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, peroxisome

Predictor Summary:

plastid 3
peroxisome 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019310.1-P	Field mustard	cytosol	55.69	97.84
CDY10932	Canola	cytosol, nucleus, peroxisome	96.31	96.31
AT4G23340.1	Thale cress	cytosol, nucleus, peroxisome	89.54	89.81
VIT_02s0025g03440.t01	Wine grape	cytosol, nucleus, peroxisome	66.15	66.98
PGSC0003DMT400000488	Potato	cytosol	61.54	62.31
KRH65048	Soybean	cytosol, nucleus, peroxisome	58.77	59.87
PGSC0003DMT400040854	Potato	cytosol, plastid	57.23	58.49
Solyc03g025490.2.1	Tomato	plastid	56.62	57.5
GSMUA_Achr1P03100_001	Banana	cytosol	55.38	56.6
KRH40458	Soybean	cytosol, nucleus, peroxisome	55.38	56.43
Solyc01g094590.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	36.92	55.3
CDX91575	Canola	cytosol, nucleus, peroxisome	52.62	53.11
CDY56648	Canola	cytosol, nucleus, peroxisome	52.31	52.8
KRH40460	Soybean	cytosol	22.46	45.91
CDX76423	Canola	cytosol, peroxisome, plastid	19.08	33.7
CDY47108	Canola	cytosol, peroxisome, plastid	19.08	33.7
CDX80345	Canola	cytosol, nucleus, peroxisome	12.62	32.28
CDY52119	Canola	cytosol, nucleus, peroxisome	11.69	29.92
CDX94029	Canola	cytosol	30.15	28.99
CDY35579	Canola	cytosol, nucleus, peroxisome	21.54	28.11
CDY32695	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	17.23	27.45
CDX79045	Canola	cytosol, nucleus, peroxisome	28.0	26.92
CDX82811	Canola	cytosol, nucleus, peroxisome	28.0	26.92
CDY47111	Canola	cytosol	10.77	21.6
CDY71106	Canola	cytosol	10.77	21.34
CDY02826	Canola	cytosol	24.0	20.58
CDY29619	Canola	plastid	29.23	12.93
CDY35580	Canola	plastid	2.46	12.5

Protein Annotations

Gene3D:2.60.120.330	MapMan:50.1.13	GO:A0A078DY94	EnsemblPlants:CDX94181	ProteinID:CDX94181	ProteinID:CDX94181.1
InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00157111001	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF212	SUPFAM:SSF51197
UniParc:UPI0004EEC7F2	:	:	:	:	:

Description

BnaC07g38150D

Coordinates

chrLK031879:-:1122524..1123647

Molecular Weight (calculated)

36899.1 Da

IEP (calculated)

5.658

GRAVY (calculated)

-0.318

Length

325 amino acids

Sequence
(BLAST)

001: MSELHSSLQL PVLDLTQPIQ SSVQSSLSQA CKEWGFFYVT NHGISKEMFS KIYSLSRDVF SAPLDSKLKL GPFSYTPRHI ASPYFESLVV SGPDFSGSAK
101: ASADVLFQDH DKPELRLETL QEYGAKMAEL SKRLVEILLM MTLGEETGKR FYQNEFSNCH GYLRLVNYTP PQDVEKQEEL VEGLGMHTDM SCITIVYQDS
201: VGGLQMRSKE GKWIDINPCD DLLVVNIGDL MQAWSNGRLR SSEHRVVLRK LVNRVSLGFF LCFEDEKVVL APQEIVGEGN CRRYKSFKCS EYLKFRQSNE
301: VGKFERIGYT VKDFAGLTLP EHDDP

Best Arabidopsis Sequence Match ( AT4G23340.1 )
(BLAST)

001: MSELHSSLQL PVLDLTQPIE SSILSSLSEA CKEWGFFYVT NHGISKEMFS KICSLSRDVF KAPLESKLKL GPISYTPRYI ASPYFESLVV SGPDFSDSAK
101: ASADVLFQDH HKPELRETMQ EYGAKMAELS KRLIKILLMM TLGDETGKRL YQTDFSNCHG YLRLVNYTPP HDVEKQEELV EGLGMHTDMS CITIVYQDSV
201: GGLQMRSKEG KWIDINPCND FLVVNIGDLM QAWSNGRLRS SEHRVVLRKL VNRVSLAFFL CFEDEKVILA PQEIVGEGKQ RSYKSFKCSE YLKFRQSNEE
301: GKFEKIGFTV KDFAGLKLAQ PDDP

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JNI3]
SUBAcon: [cytosol,nucleus,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.