Factsheet for PGSC0003DMT400040854

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g025490.2.1	Tomato	plastid	97.48	96.88
VIT_16s0050g00640.t01	Wine grape	nucleus, peroxisome, vacuole	68.24	66.98
Bra019310.1-P	Field mustard	cytosol	37.42	64.32
PGSC0003DMT400000488	Potato	cytosol	63.21	62.62
GSMUA_Achr1P03100_001	Banana	cytosol	60.06	60.06
AT4G23340.1	Thale cress	cytosol, nucleus, peroxisome	58.49	57.41
CDX94181	Canola	cytosol, nucleus, peroxisome	58.49	57.23
CDY10932	Canola	cytosol, nucleus, peroxisome	58.49	57.23
PGSC0003DMT400068810	Potato	cytosol	27.99	26.73
PGSC0003DMT400029280	Potato	cytosol	27.36	25.82
PGSC0003DMT400005250	Potato	cytosol, nucleus, peroxisome	28.93	25.63
PGSC0003DMT400078051	Potato	cytosol	27.67	24.79

Protein Annotations

EntrezGene:102603638	Gene3D:2.60.120.330	MapMan:50.1.13	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009653	GO:GO:0009987
GO:GO:0016049	GO:GO:0016491	GO:GO:0030154	GO:GO:0040007	GO:GO:0046872	GO:GO:0048767
GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M1BAJ4	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	EnsemblPlantsGene:PGSC0003DMG400015796	PGSC:PGSC0003DMG400015796	EnsemblPlants:PGSC0003DMT400040854	PFscan:PS51471
PANTHER:PTHR10209	PANTHER:PTHR10209:SF212	SUPFAM:SSF51197	UniParc:UPI0002962FBA	RefSeq:XP_006353949.1	SEG:seg

Description

Gibberellin 20-oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400015796]

Coordinates

chr3:-:43407322..43408645

Molecular Weight (calculated)

35927.0 Da

IEP (calculated)

6.983

GRAVY (calculated)

-0.214

Length

318 amino acids

Sequence
(BLAST)

001: MSESQTSVKL PIFDISRPLS SSNSLKSLSL ACKEWGFFHI SNHGIPRDLC KQLHFLSNQI FDLPCDVKLN AGPLSNIRTY TPHFIASPFF ESLRVSGPDF
101: FASAQSTSQA LINQSIPEFS HAMEVYGRKM VEVSKSIVEV ILMSLGPEFE QKFASEFKNC HGYLRVNNYT PPESTENVQE KVEGLGMHTD MSCITIVYQD
201: EVGGLQVRSK EGKWMDIDPC QDTLVVNIGD LLQAWSNGKL RSSEHRVVLK EPVSRFSIAF FWCFEDEKLI VAPQEIVGKG NLKVYKPFVC ADYLKFRESN
301: EKGKFEKVGF TVKHFAAK

Best Arabidopsis Sequence Match ( AT4G23340.1 )
(BLAST)

001: MSELHSSLQL PVLDLTQPIE SSILSSLSEA CKEWGFFYVT NHGISKEMFS KICSLSRDVF KAPLESKLKL GPISYTPRYI ASPYFESLVV SGPDFSDSAK
101: ASADVLFQDH HKPELRETMQ EYGAKMAELS KRLIKILLMM TLGDETGKRL YQTDFSNCHG YLRLVNYTPP HDVEKQEELV EGLGMHTDMS CITIVYQDSV
201: GGLQMRSKEG KWIDINPCND FLVVNIGDLM QAWSNGRLRS SEHRVVLRKL VNRVSLAFFL CFEDEKVILA PQEIVGEGKQ RSYKSFKCSE YLKFRQSNEE
301: GKFEKIGFTV KDFAGLKLAQ PDDP

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JNI3]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.