Factsheet for PGSC0003DMT400078051

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g082030.2.1	Tomato	cytosol	92.39	92.92
CDY52119	Canola	cytosol, nucleus, peroxisome	18.03	50.39
Bra002628.1-P	Field mustard	cytosol, nucleus, peroxisome	17.75	49.61
CDX80345	Canola	cytosol, nucleus, peroxisome	17.18	48.03
VIT_06s0004g06790.t01	Wine grape	cytosol	44.79	47.18
KRG98268	Soybean	cytosol	47.04	47.04
KRH30278	Soybean	cytosol	47.04	47.04
Bra020362.1-P	Field mustard	cytosol	42.54	43.39
AT5G58660.1	Thale cress	cytosol, nucleus, peroxisome	41.97	42.33
CDY32695	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	23.94	41.67
AT3G47190.1	Thale cress	cytosol	38.59	41.39
CDY02826	Canola	cytosol	41.97	39.31
GSMUA_Achr10P...	Banana	mitochondrion	38.59	38.06
Os04t0407800-01	Rice	cytosol, nucleus, peroxisome	34.08	36.01
Zm00001d035994_P001	Maize	cytosol	33.8	35.71
HORVU3Hr1G117870.1	Barley	cytosol	31.27	34.47
OQU85872	Sorghum	cytosol	33.8	34.19
TraesCS3B01G603000.1	Wheat	cytosol	31.27	33.95
TraesCS3D01G542800.1	Wheat	cytosol	31.55	33.14
PGSC0003DMT400068810	Potato	cytosol	30.7	32.73
PGSC0003DMT400029280	Potato	cytosol	30.7	32.34
PGSC0003DMT400005250	Potato	cytosol, nucleus, peroxisome	31.83	31.48
PGSC0003DMT400000488	Potato	cytosol	26.2	28.97
TraesCS3A01G537300.2	Wheat	cytosol, nucleus, peroxisome	24.23	28.2
PGSC0003DMT400040854	Potato	cytosol, plastid	24.79	27.67

Protein Annotations

EntrezGene:102591012	Gene3D:2.60.120.330	MapMan:50.1.13	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M1CZB4	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	EnsemblPlantsGene:PGSC0003DMG400030362	PGSC:PGSC0003DMG400030362	EnsemblPlants:PGSC0003DMT400078051	PRINTS:PR00682	PFscan:PS51471
PANTHER:PTHR10209	PANTHER:PTHR10209:SF206	SUPFAM:SSF51197	UniParc:UPI000296A50E	RefSeq:XP_006350843.1	SEG:seg

Description

20G-Fe(II) oxidoreductase [Source:PGSC_GENE;Acc:PGSC0003DMG400030362]

Coordinates

chr6:+:57254939..57261466

Molecular Weight (calculated)

40774.4 Da

IEP (calculated)

6.352

GRAVY (calculated)

-0.394

Length

355 amino acids

Sequence
(BLAST)

001: MSQSYYFESY PPLFRPPPNI PQIQESNSDE TESLLLDSHI PVIDYFKCTT PTIRTTKYQD VNEDRNLISE ACRDWGLFRL VNHGIPITLL NQIEEHAKKL
101: FSLPYETKKA FFANSTSSSN FVSPISYFWG SPALSPSGAA LAPKKGAQEN NNQSLQWMEG FNVSLAQLSN IHYQDLLLET FRCLLEEYGK ELSRLATEIF
201: KILGPFESNY MSIETGLLRV YRYPRCLEPE RTWGIDTHTD SSVLSIIHQD DVGGLQVYKD HQWIDVNPLP NTLIVNIGDM LQAMSDDRFM SVKHRVKVNK
301: HKERISIGYF VFPAEDTIIQ STKYNPFSYA DFRAQVQHDL KTLGLKTGLQ KFKFS

Best Arabidopsis Sequence Match ( AT5G58660.1 )
(BLAST)

001: MSISESYPPA FRRVTNDENP PATPVIVQGK DINIPVIDLE RLDKEILREA CKEWGIFRLE NHGVPLALTS RLQEISESLL SLPFEKKREL FAAVKSPLSY
101: FWGTPALNRS GDALKRGAQA SNLTMLEGFN VPLSSLSSLS KLPTSTCCDD DAQEEPKLES FRVLMEEYGK HITRIAVSLF EAIAQTLNLE LSGNRRSEYL
201: SESTGLIRVY RYPQSSEEAA REALGMEVHT DSSVISILRE DESGGLEIMK GEEWFCVKPV ANTLIVNLGD MMQAISDDEY KSVTHRVKKR NRKTERHSVC
301: YFVFPKRDCV IKSSNYKLFT YSDFEAQVQA DVQSLGTKIG LPRFNPNSPL FL

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LUZ1]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.