Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80345 | Canola | cytosol, nucleus, peroxisome | 30.68 | 85.04 |
| Bra002628.1-P | Field mustard | cytosol, nucleus, peroxisome | 30.11 | 83.46 |
| CDY52119 | Canola | cytosol, nucleus, peroxisome | 30.11 | 83.46 |
| Bra020362.1-P | Field mustard | cytosol | 80.4 | 81.32 |
| CDY32695 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole | 46.59 | 80.39 |
| CDY02826 | Canola | cytosol | 79.55 | 73.88 |
| AT3G47190.1 | Thale cress | cytosol | 57.1 | 60.73 |
| VIT_06s0004g06790.t01 | Wine grape | cytosol | 47.16 | 49.26 |
| KRG98268 | Soybean | cytosol | 49.43 | 49.01 |
| KRH30278 | Soybean | cytosol | 48.3 | 47.89 |
| Solyc06g082030.2.1 | Tomato | cytosol | 43.18 | 43.06 |
| GSMUA_Achr10P... | Banana | mitochondrion | 43.75 | 42.78 |
| PGSC0003DMT400078051 | Potato | cytosol | 42.33 | 41.97 |
| Zm00001d035994_P001 | Maize | cytosol | 37.5 | 39.29 |
| TraesCS3B01G603000.1 | Wheat | cytosol | 36.36 | 39.14 |
| Os04t0407800-01 | Rice | cytosol, nucleus, peroxisome | 37.22 | 38.99 |
| HORVU3Hr1G117870.1 | Barley | cytosol | 34.66 | 37.89 |
| TraesCS3D01G542800.1 | Wheat | cytosol | 35.51 | 36.98 |
| OQU85872 | Sorghum | cytosol | 35.8 | 35.9 |
| TraesCS3A01G537300.2 | Wheat | cytosol, nucleus, peroxisome | 27.84 | 32.13 |
| AT4G21200.1 | Thale cress | cytosol, nucleus, peroxisome | 30.11 | 31.36 |
| AT1G50960.1 | Thale cress | plastid | 28.69 | 30.06 |
| AT4G23340.1 | Thale cress | cytosol, nucleus, peroxisome | 22.73 | 24.69 |
| AT5G51310.1 | Thale cress | cytosol, nucleus, peroxisome | 21.02 | 22.77 |
Protein Annotations
| Gene3D:2.60.120.330 | MapMan:50.1.13 | EntrezGene:835980 | ProteinID:AED97082.1 | ArrayExpress:AT5G58660 | EnsemblPlantsGene:AT5G58660 |
| RefSeq:AT5G58660 | TAIR:AT5G58660 | RefSeq:AT5G58660-TAIR-G | EnsemblPlants:AT5G58660.1 | TAIR:AT5G58660.1 | ProteinID:BAA97335.1 |
| InterPro:DIOX_N | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016491 | GO:GO:0046872 | GO:GO:0055114 | InterPro:IPNS-like | InterPro:IPR005123 | InterPro:IPR027443 |
| RefSeq:NP_200674.1 | InterPro:Oxoglu/Fe-dep_dioxygenase | PFAM:PF03171 | PFAM:PF14226 | PO:PO:0000293 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0025022 | PRINTS:PR00682 | PFscan:PS51471 | PANTHER:PTHR10209 | PANTHER:PTHR10209:SF206 |
| UniProt:Q9LUZ1 | SUPFAM:SSF51197 | UniParc:UPI00000AB28B | SEG:seg | : | : |
Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LUZ1]
Coordinates
chr5:+:23701392..23704122
Molecular Weight (calculated)
39670.3 Da
IEP (calculated)
5.545
GRAVY (calculated)
-0.340
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MSISESYPPA FRRVTNDENP PATPVIVQGK DINIPVIDLE RLDKEILREA CKEWGIFRLE NHGVPLALTS RLQEISESLL SLPFEKKREL FAAVKSPLSY
101: FWGTPALNRS GDALKRGAQA SNLTMLEGFN VPLSSLSSLS KLPTSTCCDD DAQEEPKLES FRVLMEEYGK HITRIAVSLF EAIAQTLNLE LSGNRRSEYL
201: SESTGLIRVY RYPQSSEEAA REALGMEVHT DSSVISILRE DESGGLEIMK GEEWFCVKPV ANTLIVNLGD MMQAISDDEY KSVTHRVKKR NRKTERHSVC
301: YFVFPKRDCV IKSSNYKLFT YSDFEAQVQA DVQSLGTKIG LPRFNPNSPL FL
101: FWGTPALNRS GDALKRGAQA SNLTMLEGFN VPLSSLSSLS KLPTSTCCDD DAQEEPKLES FRVLMEEYGK HITRIAVSLF EAIAQTLNLE LSGNRRSEYL
201: SESTGLIRVY RYPQSSEEAA REALGMEVHT DSSVISILRE DESGGLEIMK GEEWFCVKPV ANTLIVNLGD MMQAISDDEY KSVTHRVKKR NRKTERHSVC
301: YFVFPKRDCV IKSSNYKLFT YSDFEAQVQA DVQSLGTKIG LPRFNPNSPL FL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.