Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94181 | Canola | cytosol, nucleus, peroxisome | 89.81 | 89.54 |
| Bra019310.1-P | Field mustard | cytosol | 50.62 | 88.65 |
| CDY10932 | Canola | cytosol, nucleus, peroxisome | 88.27 | 88.0 |
| VIT_02s0025g03440.t01 | Wine grape | cytosol, nucleus, peroxisome | 65.12 | 65.73 |
| PGSC0003DMT400000488 | Potato | cytosol | 62.65 | 63.24 |
| KRH65048 | Soybean | cytosol, nucleus, peroxisome | 58.33 | 59.25 |
| PGSC0003DMT400040854 | Potato | cytosol, plastid | 57.41 | 58.49 |
| Solyc03g025490.2.1 | Tomato | plastid | 56.79 | 57.5 |
| KRH40458 | Soybean | cytosol, nucleus, peroxisome | 56.17 | 57.05 |
| GSMUA_Achr1P03100_001 | Banana | cytosol | 54.94 | 55.97 |
| Solyc01g094590.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 36.42 | 54.38 |
| AT5G51310.1 | Thale cress | cytosol, nucleus, peroxisome | 52.78 | 52.62 |
| KRH40460 | Soybean | cytosol | 22.84 | 46.54 |
| AT4G21200.1 | Thale cress | cytosol, nucleus, peroxisome | 30.25 | 28.99 |
| AT1G50960.1 | Thale cress | plastid | 27.78 | 26.79 |
| AT3G47190.1 | Thale cress | cytosol | 23.46 | 22.96 |
| AT5G58660.1 | Thale cress | cytosol, nucleus, peroxisome | 24.69 | 22.73 |
Protein Annotations
| Gene3D:2.60.120.330 | MapMan:50.1.13 | EntrezGene:828433 | UniProt:A0A178V7E1 | ProteinID:AEE84742.1 | ArrayExpress:AT4G23340 |
| EnsemblPlantsGene:AT4G23340 | RefSeq:AT4G23340 | TAIR:AT4G23340 | RefSeq:AT4G23340-TAIR-G | EnsemblPlants:AT4G23340.1 | TAIR:AT4G23340.1 |
| Unigene:At.50362 | ncoils:Coil | InterPro:DIOX_N | UniProt:F4JNI3 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0046872 | GO:GO:0055114 |
| InterPro:IPNS-like | InterPro:IPR005123 | InterPro:IPR027443 | RefSeq:NP_194065.3 | ProteinID:OAP00913.1 | InterPro:Oxoglu/Fe-dep_dioxygenase |
| PFAM:PF03171 | PFAM:PF14226 | PFscan:PS51471 | PANTHER:PTHR10209 | PANTHER:PTHR10209:SF212 | SUPFAM:SSF51197 |
| UniParc:UPI000173942D | SEG:seg | : | : | : | : |
Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JNI3]
Coordinates
chr4:-:12195453..12196826
Molecular Weight (calculated)
36796.2 Da
IEP (calculated)
6.318
GRAVY (calculated)
-0.303
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MSELHSSLQL PVLDLTQPIE SSILSSLSEA CKEWGFFYVT NHGISKEMFS KICSLSRDVF KAPLESKLKL GPISYTPRYI ASPYFESLVV SGPDFSDSAK
101: ASADVLFQDH HKPELRETMQ EYGAKMAELS KRLIKILLMM TLGDETGKRL YQTDFSNCHG YLRLVNYTPP HDVEKQEELV EGLGMHTDMS CITIVYQDSV
201: GGLQMRSKEG KWIDINPCND FLVVNIGDLM QAWSNGRLRS SEHRVVLRKL VNRVSLAFFL CFEDEKVILA PQEIVGEGKQ RSYKSFKCSE YLKFRQSNEE
301: GKFEKIGFTV KDFAGLKLAQ PDDP
101: ASADVLFQDH HKPELRETMQ EYGAKMAELS KRLIKILLMM TLGDETGKRL YQTDFSNCHG YLRLVNYTPP HDVEKQEELV EGLGMHTDMS CITIVYQDSV
201: GGLQMRSKEG KWIDINPCND FLVVNIGDLM QAWSNGRLRS SEHRVVLRKL VNRVSLAFFL CFEDEKVILA PQEIVGEGKQ RSYKSFKCSE YLKFRQSNEE
301: GKFEKIGFTV KDFAGLKLAQ PDDP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.