Factsheet for VIT_02s0025g03440.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
peroxisome 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0046g02550.t01	Wine grape	cytosol, nucleus, peroxisome	70.09	68.6
VIT_16s0050g00640.t01	Wine grape	nucleus, peroxisome, vacuole	69.16	68.52
Bra019310.1-P	Field mustard	cytosol	39.25	68.11
CDX94181	Canola	cytosol, nucleus, peroxisome	66.98	66.15
CDY10932	Canola	cytosol, nucleus, peroxisome	66.36	65.54
AT4G23340.1	Thale cress	cytosol, nucleus, peroxisome	65.73	65.12
GSMUA_Achr1P03100_001	Banana	cytosol	61.68	62.26
VIT_01s0010g01650.t01	Wine grape	cytosol, nucleus, peroxisome	30.22	26.72
VIT_19s0177g00020.t01	Wine grape	plastid	17.76	25.56
VIT_10s0116g00410.t01	Wine grape	cytosol, nucleus, peroxisome	27.1	25.29
VIT_06s0004g06790.t01	Wine grape	cytosol	26.48	25.22
VIT_19s0177g00030.t01	Wine grape	vacuole	28.35	24.8

Protein Annotations

EntrezGene:100253106	wikigene:100253106	Gene3D:2.60.120.330	MapMan:50.1.13	ProteinID:CBI34664	ProteinID:CBI34664.3
UniProt:D7TVY9	InterPro:DIOX_N	EMBL:FN596251	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	EntrezGene:LOC100253106	wikigene:LOC100253106	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF212	SUPFAM:SSF51197	UniParc:UPI00015CC4E5
ArrayExpress:VIT_02s0025g03440	EnsemblPlantsGene:VIT_02s0025g03440	EnsemblPlants:VIT_02s0025g03440.t01	RefSeq:XP_002270279	RefSeq:XP_002270279.1	:

Description

No Description!

Coordinates

chr2:+:2939781..2941071

Molecular Weight (calculated)

36337.4 Da

IEP (calculated)

4.720

GRAVY (calculated)

-0.229

Length

321 amino acids

Sequence
(BLAST)

001: MNEPPTPIQL PVLDLSQPVH PSFLTSLSQA CEEWGFFHVM NHGIPQDLFS KVCLLSKHIF SLPADSKLKL GPSSSIKTYT PRFIASPFFE SLRIAGPDFL
101: ASAKSSVAEL FDQQNSEFSE TLQEYGSKMV ELSKRIVEAV LMSLGDGYER KFNESEFNNC QGYLRLVNYS PPECVEDEEV EGLGMHTDMS CITIVYQDEI
201: GGLQMRSKGG EWIDITPCEG TLVVNIGDLM QGWSNGRLRS SEHRVVLKRF VNRLSLAFFW CFEDEKVVLA PDEIVGEGNS RIYKPFVCLE YLKFRESNEE
301: GKYEKVGYTV KDFAALKLEM K

Best Arabidopsis Sequence Match ( AT4G23340.1 )
(BLAST)

001: MSELHSSLQL PVLDLTQPIE SSILSSLSEA CKEWGFFYVT NHGISKEMFS KICSLSRDVF KAPLESKLKL GPISYTPRYI ASPYFESLVV SGPDFSDSAK
101: ASADVLFQDH HKPELRETMQ EYGAKMAELS KRLIKILLMM TLGDETGKRL YQTDFSNCHG YLRLVNYTPP HDVEKQEELV EGLGMHTDMS CITIVYQDSV
201: GGLQMRSKEG KWIDINPCND FLVVNIGDLM QAWSNGRLRS SEHRVVLRKL VNRVSLAFFL CFEDEKVILA PQEIVGEGKQ RSYKSFKCSE YLKFRQSNEE
301: GKFEKIGFTV KDFAGLKLAQ PDDP

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JNI3]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.