Factsheet for VIT_10s0116g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005250	Potato	cytosol, nucleus, peroxisome	70.35	67.41
PGSC0003DMT400029280	Potato	cytosol	65.7	67.06
Solyc02g080120.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	70.06	63.42
Solyc10g005360.2.1	Tomato	cytosol	49.71	59.17
VIT_19s0177g00030.t01	Wine grape	vacuole	59.59	55.86
GSMUA_Achr9P11880_001	Banana	cytosol, nucleus, peroxisome	50.87	53.68
VIT_19s0177g00020.t01	Wine grape	plastid	34.3	52.91
VIT_01s0010g01650.t01	Wine grape	cytosol, nucleus, peroxisome	54.07	51.24
GSMUA_Achr6P21950_001	Banana	cytosol, nucleus, peroxisome	50.29	49.86
GSMUA_Achr8P03660_001	Banana	endoplasmic reticulum, golgi	51.16	42.11
VIT_06s0004g06790.t01	Wine grape	cytosol	30.81	31.45
VIT_16s0050g00640.t01	Wine grape	nucleus, peroxisome, vacuole	26.45	28.09
VIT_02s0025g03440.t01	Wine grape	cytosol, nucleus, peroxisome	25.29	27.1
VIT_15s0046g02550.t01	Wine grape	cytosol, nucleus, peroxisome	24.13	25.3

Protein Annotations

EntrezGene:100245189	wikigene:100245189	Gene3D:2.60.120.330	MapMan:50.1.13	ProteinID:CCB48163	ProteinID:CCB48163.1
ncoils:Coil	InterPro:DIOX_N	UniProt:F6H7K2	EMBL:FN595248	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	EntrezGene:LOC100245189	wikigene:LOC100245189	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF386	SUPFAM:SSF51197
TIGR:TC55701	TIGR:TC61444	UniParc:UPI0001984137	ArrayExpress:VIT_10s0116g00410	EnsemblPlantsGene:VIT_10s0116g00410	EnsemblPlants:VIT_10s0116g00410.t01
unigene:Vvi.10129	RefSeq:XP_002268173	RefSeq:XP_002268173.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:-:190070..195160

Molecular Weight (calculated)

39319.2 Da

IEP (calculated)

5.684

GRAVY (calculated)

-0.269

Length

344 amino acids

Sequence
(BLAST)

001: MVESDTKLPF SMDSDPPFEE TYKTLFENSI EESKINRANQ ILITCEECEL PLIDIGRLSM GELEREECKK EIARASQEWG FFQVINHGVS SEILEDMRSK
101: QMQVFKQPFR LKTNHQYLNL SAGCYRWGTP TATCLSQLSW SEAFHIPLMD ISSSGGLPTT LSSTMGQFAA TVSDLAQRLV EILAEEMGHK STFFKEKCLP
201: STCYIRMNRY PPCPTSQIFG LMPHTDSDFL TILHQDQVGG LQLVKDGRWI AVKPNPEALI INIGDLFQAW SNGVYKSVQH RVVTNQKVER FSTAYFLCPS
301: YDAVIESCVE PLLYRKFSFR EFRQQVQEDV QKLGYKVGLP RFLV

Best Arabidopsis Sequence Match ( AT4G21200.1 )
(BLAST)

001: MDPPFNEIYN NLLYNQITKK DNDVSEIPFS FSVTAVVEEV ELPVIDVSRL IDGAEEEREK CKEAIARASR EWGFFQVINH GISMDVLEKM RQEQIRVFRE
101: PFDKKSKSEK FSAGSYRWGT PSATSIRQLS WSEAFHVPMT DISDNKDFTT LSSTMEKFAS ESEALAYMLA EVLAEKSGQN SSFFKENCVR NTCYLRMNRY
201: PPCPKPSEVY GLMPHTDSDF LTILYQDQVG GLQLIKDNRW IAVKPNPKAL IINIGDLFQA WSNGMYKSVE HRVMTNPKVE RFSTAYFMCP SYDAVIECSS
301: DRPAYRNFSF REFRQQVQED VKKFGFKVGL PRFLNHVY

Arabidopsis Description

GA2OX8Gibberellin 2-beta-dioxygenase 8 [Source:UniProtKB/Swiss-Prot;Acc:O49561]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.