Factsheet for PGSC0003DMT400029280

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g005360.2.1	Tomato	cytosol	74.18	86.51
PGSC0003DMT400005250	Potato	cytosol, nucleus, peroxisome	75.96	71.31
VIT_10s0116g00410.t01	Wine grape	cytosol, nucleus, peroxisome	67.06	65.7
PGSC0003DMT400068810	Potato	cytosol	53.71	54.35
GSMUA_Achr9P11880_001	Banana	cytosol, nucleus, peroxisome	52.23	53.99
GSMUA_Achr6P21950_001	Banana	cytosol, nucleus, peroxisome	51.04	49.57
GSMUA_Achr8P03660_001	Banana	endoplasmic reticulum, golgi	49.85	40.19
PGSC0003DMT400078051	Potato	cytosol	32.34	30.7
PGSC0003DMT400000488	Potato	cytosol	27.3	28.66
PGSC0003DMT400040854	Potato	cytosol, plastid	25.82	27.36

Protein Annotations

EntrezGene:102594345	Gene3D:2.60.120.330	MapMan:50.1.13	ncoils:Coil	InterPro:DIOX_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872
GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M1ASI2	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	EnsemblPlantsGene:PGSC0003DMG400011254	PGSC:PGSC0003DMG400011254	EnsemblPlants:PGSC0003DMT400029280	PFscan:PS51471
PANTHER:PTHR10209	PANTHER:PTHR10209:SF386	SUPFAM:SSF51197	UniParc:UPI000296E687	RefSeq:XP_006352602.1	SEG:seg

Description

Gibberellin 2-oxidase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400011254]

Coordinates

chr10:-:397666..403499

Molecular Weight (calculated)

39225.7 Da

IEP (calculated)

5.676

GRAVY (calculated)

-0.395

Length

337 amino acids

Sequence
(BLAST)

001: MEESPDPPFV ETYKNLFDTN ILNEKHNDLF MVEECELPLI NLHQLKYGDK FERQECKKKI AKASREWGFF QVVNHGVSPN ILEEMRTEQV TLFKKTFNEK
101: MNIDKSLNFS EGSYRWGTPT ATCLRQISWS EAFHVPLSDV SKGFSSLSST MEEFATTLSE LAQELARLLA EELGDYNYKL DYFKETCLAS TCYLRMNRYP
201: ACPISPQLFG LMPHTDSDFL TILHQDEIGG LQLFRDGKWI SVKPNHEALI INIGDLFQAW SNGVYRSVEH RVVTNKFKER FSTAFFLCPS YDTEILSCVE
301: PCLYRKFTFR EFRQQVQEDV KNFGYKIGLP RFLVSTN

Best Arabidopsis Sequence Match ( AT4G21200.1 )
(BLAST)

001: MDPPFNEIYN NLLYNQITKK DNDVSEIPFS FSVTAVVEEV ELPVIDVSRL IDGAEEEREK CKEAIARASR EWGFFQVINH GISMDVLEKM RQEQIRVFRE
101: PFDKKSKSEK FSAGSYRWGT PSATSIRQLS WSEAFHVPMT DISDNKDFTT LSSTMEKFAS ESEALAYMLA EVLAEKSGQN SSFFKENCVR NTCYLRMNRY
201: PPCPKPSEVY GLMPHTDSDF LTILYQDQVG GLQLIKDNRW IAVKPNPKAL IINIGDLFQA WSNGMYKSVE HRVMTNPKVE RFSTAYFMCP SYDAVIECSS
301: DRPAYRNFSF REFRQQVQED VKKFGFKVGL PRFLNHVY

Arabidopsis Description

GA2OX8Gibberellin 2-beta-dioxygenase 8 [Source:UniProtKB/Swiss-Prot;Acc:O49561]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.