Factsheet for PGSC0003DMT400000488

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
peroxisome 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g094590.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	53.58	79.26
VIT_15s0046g02550.t01	Wine grape	cytosol, nucleus, peroxisome	71.65	70.12
KRH65048	Soybean	cytosol, nucleus, peroxisome	67.29	67.71
KRH40458	Soybean	cytosol, nucleus, peroxisome	65.73	66.14
Bra019310.1-P	Field mustard	cytosol	37.07	64.32
PGSC0003DMT400040854	Potato	cytosol, plastid	62.62	63.21
AT4G23340.1	Thale cress	cytosol, nucleus, peroxisome	63.24	62.65
CDX94181	Canola	cytosol, nucleus, peroxisome	62.31	61.54
GSMUA_Achr1P03100_001	Banana	cytosol	60.75	61.32
CDY10932	Canola	cytosol, nucleus, peroxisome	61.99	61.23
KRH40460	Soybean	cytosol	27.41	55.35
PGSC0003DMT400068810	Potato	cytosol	30.53	29.43
PGSC0003DMT400029280	Potato	cytosol	28.66	27.3
PGSC0003DMT400078051	Potato	cytosol	28.97	26.2
PGSC0003DMT400005250	Potato	cytosol, nucleus, peroxisome	28.97	25.91

Protein Annotations

EntrezGene:102594047	Gene3D:2.60.120.330	MapMan:50.1.13	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M0ZGU0	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	EnsemblPlantsGene:PGSC0003DMG400000170	PGSC:PGSC0003DMG400000170	EnsemblPlants:PGSC0003DMT400000488	PFscan:PS51471	PANTHER:PTHR10209
PANTHER:PTHR10209:SF212	SUPFAM:SSF51197	UniParc:UPI0002968B14	RefSeq:XP_006339568.1	SEG:seg	:

Description

Gibberellin 20-oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400000170]

Coordinates

chr1:-:72132456..72136070

Molecular Weight (calculated)

35857.8 Da

IEP (calculated)

5.103

GRAVY (calculated)

-0.215

Length

321 amino acids

Sequence
(BLAST)

001: MILESQSPLQ LPILDISQPS NSSTLSSLAA ACKEWGFFHV INHGISNDLY RKINCLSKHL FNLPSETKLK AGPYSSLKTY TPHFIASPFF ESLKVSGPDF
101: SDSAKGSADT LAGEGNSEFS EILQEYGGKM TELAKVIQKT VLMSLGEELG MKYYVSEFGN CNGYLRINNY SPPDSLEQEV EGLGMHTDMS CITIVYQDEL
201: GGLQVRSKDG KWVDILPCEG TLVVNIGDML QAWSNDKLRS SEHRVILKKP VNRFSLVFFW CFEDEKVILA PDEVVGEENS RIYKSFVCSD YLNFRLTNEN
301: GKFEKVGFTV KDFVGIGSKL K

Best Arabidopsis Sequence Match ( AT4G23340.1 )
(BLAST)

001: MSELHSSLQL PVLDLTQPIE SSILSSLSEA CKEWGFFYVT NHGISKEMFS KICSLSRDVF KAPLESKLKL GPISYTPRYI ASPYFESLVV SGPDFSDSAK
101: ASADVLFQDH HKPELRETMQ EYGAKMAELS KRLIKILLMM TLGDETGKRL YQTDFSNCHG YLRLVNYTPP HDVEKQEELV EGLGMHTDMS CITIVYQDSV
201: GGLQMRSKEG KWIDINPCND FLVVNIGDLM QAWSNGRLRS SEHRVVLRKL VNRVSLAFFL CFEDEKVILA PQEIVGEGKQ RSYKSFKCSE YLKFRQSNEE
301: GKFEKIGFTV KDFAGLKLAQ PDDP

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JNI3]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.