Factsheet for VIT_15s0046g02550.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0050g00640.t01	Wine grape	nucleus, peroxisome, vacuole	71.65	72.53
KRH65048	Soybean	cytosol, nucleus, peroxisome	70.12	72.1
PGSC0003DMT400000488	Potato	cytosol	70.12	71.65
VIT_02s0025g03440.t01	Wine grape	cytosol, nucleus, peroxisome	68.6	70.09
KRH40458	Soybean	cytosol, nucleus, peroxisome	66.16	68.03
GSMUA_Achr1P03100_001	Banana	cytosol	62.5	64.47
Solyc01g094590.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	41.16	62.21
KRH40460	Soybean	cytosol	27.74	57.23
VIT_06s0004g06790.t01	Wine grape	cytosol	26.52	25.82
VIT_19s0177g00030.t01	Wine grape	vacuole	28.66	25.61
VIT_01s0010g01650.t01	Wine grape	cytosol, nucleus, peroxisome	28.05	25.34
VIT_19s0177g00020.t01	Wine grape	plastid	16.77	24.66
VIT_10s0116g00410.t01	Wine grape	cytosol, nucleus, peroxisome	25.3	24.13

Protein Annotations

EntrezGene:100256734	wikigene:100256734	Gene3D:2.60.120.330	MapMan:50.1.13	UniProt:A5C4W0	EMBL:AM482406
ProteinID:CAN75307	ProteinID:CAN75307.1	ProteinID:CBI40376	ProteinID:CBI40376.3	InterPro:DIOX_N	EMBL:FN596755
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	EntrezGene:LOC100256734
wikigene:LOC100256734	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209
PANTHER:PTHR10209:SF212	SUPFAM:SSF51197	UniParc:UPI0001522970	ArrayExpress:VIT_15s0046g02550	EnsemblPlantsGene:VIT_15s0046g02550	EnsemblPlants:VIT_15s0046g02550.t01
RefSeq:XP_002274751	RefSeq:XP_002274751.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr15:+:19336280..19337354

Molecular Weight (calculated)

37050.3 Da

IEP (calculated)

5.285

GRAVY (calculated)

-0.217

Length

328 amino acids

Sequence
(BLAST)

001: MSESDQNSVE LPVLDISQPL QPASLLSLAE ACKEWGFFHI TSHGITKDLY GRLCLLSKSL FSLPSDTKLK LGPFSSLKTY TPHFIASPFF ESLRVSGPDF
101: FVSAQSSADV LFDKQNSEFS EVLQEYGKKM TELSKRIMEI VLMSLGEGFV KKYYEAEFNG CHGYLRIINY SPPDDFKEEV EGLGMHTDMS CVTVVYPDEI
201: GGLQVRSREG KWMDISPCEG TLVVNIGDML QAWSNGKLRS SEHRVVLKKP VNRFSLAFFW CFEDEKVILA PDEVIGEGNT RMYKPFVCLD YVKFRESSEK
301: GKFEKVGFTV KDFAGINITR THPPENLS

Best Arabidopsis Sequence Match ( AT4G23340.1 )
(BLAST)

001: MSELHSSLQL PVLDLTQPIE SSILSSLSEA CKEWGFFYVT NHGISKEMFS KICSLSRDVF KAPLESKLKL GPISYTPRYI ASPYFESLVV SGPDFSDSAK
101: ASADVLFQDH HKPELRETMQ EYGAKMAELS KRLIKILLMM TLGDETGKRL YQTDFSNCHG YLRLVNYTPP HDVEKQEELV EGLGMHTDMS CITIVYQDSV
201: GGLQMRSKEG KWIDINPCND FLVVNIGDLM QAWSNGRLRS SEHRVVLRKL VNRVSLAFFL CFEDEKVILA PQEIVGEGKQ RSYKSFKCSE YLKFRQSNEE
301: GKFEKIGFTV KDFAGLKLAQ PDDP

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JNI3]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.