Factsheet for VIT_16s0050g00640.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, peroxisome, nucleus

Predictor Summary:

nucleus 2
peroxisome 1
cytosol 1
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0046g02550.t01	Wine grape	cytosol, nucleus, peroxisome	72.53	71.65
VIT_02s0025g03440.t01	Wine grape	cytosol, nucleus, peroxisome	68.52	69.16
PGSC0003DMT400040854	Potato	cytosol, plastid	66.98	68.24
Solyc03g025490.2.1	Tomato	plastid	66.98	67.81
GSMUA_Achr1P03100_001	Banana	cytosol	60.49	61.64
VIT_01s0010g01650.t01	Wine grape	cytosol, nucleus, peroxisome	31.17	27.82
VIT_19s0177g00020.t01	Wine grape	plastid	18.21	26.46
VIT_10s0116g00410.t01	Wine grape	cytosol, nucleus, peroxisome	28.09	26.45
VIT_06s0004g06790.t01	Wine grape	cytosol	27.16	26.11
VIT_19s0177g00030.t01	Wine grape	vacuole	29.32	25.89

Protein Annotations

EntrezGene:100249089	wikigene:100249089	Gene3D:2.60.120.330	MapMan:50.1.13	ProteinID:CBI22703	ProteinID:CBI22703.3
InterPro:DIOX_N	UniProt:E0CV03	EMBL:FN595243	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009653	GO:GO:0009987	GO:GO:0016049
GO:GO:0016491	GO:GO:0030154	GO:GO:0040007	GO:GO:0046872	GO:GO:0048767	GO:GO:0055114
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	EntrezGene:LOC100249089	wikigene:LOC100249089	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF212	SUPFAM:SSF51197
UniParc:UPI0001BE215C	ArrayExpress:VIT_16s0050g00640	EnsemblPlantsGene:VIT_16s0050g00640	EnsemblPlants:VIT_16s0050g00640.t01	RefSeq:XP_002271841	RefSeq:XP_002271841.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:-:17593050..17594524

Molecular Weight (calculated)

36697.7 Da

IEP (calculated)

5.098

GRAVY (calculated)

-0.216

Length

324 amino acids

Sequence
(BLAST)

001: MPESQTSIEL PVFDIGQSQP FDPSSLSSLL LACKEWGFFH ITNHGISMDL FKKLKSLSNS LFCLPSVSKL KVGPSSSLRT YTPHFIASPF FESFRVSGPD
101: FFTSAQSSAE VVFNHPNSEF SEVFQEYCTK MSQLSKRMIE VVLMCLGNDF EKRLYESEFN NCNGYLRINN YSPPESTKEV EGLGMHTDMS CITIVYQDEI
201: GGLQVRSKEG KWMDINPCEG TLVVNIGDLM QAWSNANLRS SEHRVVLKQQ HVNRLSLAFF WCFEDDKVII SPNEVVGEGN SRIYQPFVCA DYLKFRESNE
301: KGKFEKVGFT VKDFAGIGEC MELL

Best Arabidopsis Sequence Match ( AT4G23340.1 )
(BLAST)

001: MSELHSSLQL PVLDLTQPIE SSILSSLSEA CKEWGFFYVT NHGISKEMFS KICSLSRDVF KAPLESKLKL GPISYTPRYI ASPYFESLVV SGPDFSDSAK
101: ASADVLFQDH HKPELRETMQ EYGAKMAELS KRLIKILLMM TLGDETGKRL YQTDFSNCHG YLRLVNYTPP HDVEKQEELV EGLGMHTDMS CITIVYQDSV
201: GGLQMRSKEG KWIDINPCND FLVVNIGDLM QAWSNGRLRS SEHRVVLRKL VNRVSLAFFL CFEDEKVILA PQEIVGEGKQ RSYKSFKCSE YLKFRQSNEE
301: GKFEKIGFTV KDFAGLKLAQ PDDP

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JNI3]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.