Factsheet for VIT_19s0177g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
peroxisome 1
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57481	Soybean	cytosol	14.8	44.0
VIT_19s0177g00030.t01	Wine grape	vacuole	56.5	34.33
VIT_10s0116g00410.t01	Wine grape	cytosol, nucleus, peroxisome	52.91	34.3
GSMUA_Achr9P11880_001	Banana	cytosol, nucleus, peroxisome	46.64	31.9
KRH27095	Soybean	cytosol, nucleus, peroxisome	47.98	31.66
KRH22245	Soybean	cytosol, nucleus, peroxisome	44.39	31.03
KRH57748	Soybean	cytosol, nucleus, peroxisome	44.84	30.67
KRH27091	Soybean	cytosol	44.39	30.65
KRH22241	Soybean	cytosol, nucleus, peroxisome	46.19	30.56
VIT_01s0010g01650.t01	Wine grape	cytosol, nucleus, peroxisome	49.33	30.3
GSMUA_Achr6P21950_001	Banana	cytosol, nucleus, peroxisome	45.74	29.39
KRH04670	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.5	28.03
CDY35579	Canola	cytosol, nucleus, peroxisome	30.94	27.71
KRH04189	Soybean	cytosol, nucleus, peroxisome	43.05	27.59
GSMUA_Achr8P03660_001	Banana	endoplasmic reticulum, golgi	44.84	23.92
AT1G50960.1	Thale cress	plastid	35.87	23.81
VIT_06s0004g06790.t01	Wine grape	cytosol	28.25	18.69
VIT_16s0050g00640.t01	Wine grape	nucleus, peroxisome, vacuole	26.46	18.21
VIT_02s0025g03440.t01	Wine grape	cytosol, nucleus, peroxisome	25.56	17.76
VIT_15s0046g02550.t01	Wine grape	cytosol, nucleus, peroxisome	24.66	16.77
CDY29619	Canola	plastid	35.43	10.75
Bra030461.1-P	Field mustard	plastid	35.43	10.51
CDY35580	Canola	plastid	2.69	9.38

Protein Annotations

Gene3D:2.60.120.330	MapMan:50.1.13	ProteinID:CBI23931	ProteinID:CBI23931.3	UniProt:D7T0A2	EMBL:FN595498
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF248	SUPFAM:SSF51197	UniParc:UPI0001BE23D8
ArrayExpress:VIT_19s0177g00020	EnsemblPlantsGene:VIT_19s0177g00020	EnsemblPlants:VIT_19s0177g00020.t01	:	:	:

Description

No Description!

Coordinates

chr19:-:5852014..5864139

Molecular Weight (calculated)

25467.9 Da

IEP (calculated)

7.614

GRAVY (calculated)

-0.001

Length

223 amino acids

Sequence
(BLAST)

001: MQSLHGLYSY VLLSHKSHLS LFGLVRLGRD LLVNHGISSD IVAWLRSEQV KLFRQPFNKK ANEKLLNLPS GNYRWGTQTA STLMQFSWSE AFHIPLVDMQ
101: EQSEISCLRS TIDELAVKVF ELAQQIAQIL VENLSGKSTF FAENCLPSSC FLRMNRYPPC LVSPNVFRIV PHTDSDFLTI LHQDEVGRLQ IIKDGKWIGV
201: MPNPEALIIN ILQYGHFPLV WNN

Best Arabidopsis Sequence Match ( AT4G21200.1 )
(BLAST)

001: MDPPFNEIYN NLLYNQITKK DNDVSEIPFS FSVTAVVEEV ELPVIDVSRL IDGAEEEREK CKEAIARASR EWGFFQVINH GISMDVLEKM RQEQIRVFRE
101: PFDKKSKSEK FSAGSYRWGT PSATSIRQLS WSEAFHVPMT DISDNKDFTT LSSTMEKFAS ESEALAYMLA EVLAEKSGQN SSFFKENCVR NTCYLRMNRY
201: PPCPKPSEVY GLMPHTDSDF LTILYQDQVG GLQLIKDNRW IAVKPNPKAL IINIGDLFQA WSNGMYKSVE HRVMTNPKVE RFSTAYFMCP SYDAVIECSS
301: DRPAYRNFSF REFRQQVQED VKKFGFKVGL PRFLNHVY

Arabidopsis Description

GA2OX8Gibberellin 2-beta-dioxygenase 8 [Source:UniProtKB/Swiss-Prot;Acc:O49561]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.