CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
MultiLoc:	plasma membrane
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G50960.1	Thale cress	plastid	81.25	15.48
CDY47111	Canola	cytosol	26.56	10.49
CDY71106	Canola	cytosol	26.56	10.37
CDY29619	Canola	plastid	95.31	8.3
GSMUA_Achr9P11880_001	Banana	cytosol, nucleus, peroxisome	29.69	5.83
KRH04189	Soybean	cytosol, nucleus, peroxisome	28.12	5.17
CDX94029	Canola	cytosol	26.56	5.03
CDX82811	Canola	cytosol, nucleus, peroxisome	26.56	5.03
CDX79045	Canola	cytosol, nucleus, peroxisome	26.56	5.03
KRH27091	Soybean	cytosol	25.0	4.95
KRH04670	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	26.56	4.91
KRH57748	Soybean	cytosol, nucleus, peroxisome	25.0	4.91
GSMUA_Achr6P21950_001	Banana	cytosol, nucleus, peroxisome	26.56	4.9
KRH22245	Soybean	cytosol, nucleus, peroxisome	23.44	4.7
VIT_19s0177g00030.t01	Wine grape	vacuole	26.56	4.63
GSMUA_Achr8P03660_001	Banana	endoplasmic reticulum, golgi	29.69	4.55
KRH22241	Soybean	cytosol, nucleus, peroxisome	23.44	4.45
KRH27095	Soybean	cytosol, nucleus, peroxisome	23.44	4.44
CDY56648	Canola	cytosol, nucleus, peroxisome	17.19	3.42
CDX91575	Canola	cytosol, nucleus, peroxisome	17.19	3.42
CDY02826	Canola	cytosol	17.19	2.9
VIT_19s0177g00020.t01	Wine grape	plastid	9.38	2.69
CDY10932	Canola	cytosol, nucleus, peroxisome	12.5	2.46
CDX94181	Canola	cytosol, nucleus, peroxisome	12.5	2.46
CDY32695	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	4.69	1.47
KRH57481	Soybean	cytosol	1.56	1.33
CDY52119	Canola	cytosol, nucleus, peroxisome	0.0	0.0
CDY47108	Canola	cytosol, peroxisome, plastid	0.0	0.0
CDY35579	Canola	cytosol, nucleus, peroxisome	0.0	0.0
CDX80345	Canola	cytosol, nucleus, peroxisome	0.0	0.0
CDX76423	Canola	cytosol, peroxisome, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY35580	EnsemblPlantsGene:GSBRNA2T00058901001	ProteinID:CDY35580	ProteinID:CDY35580.1	UniParc:UPI0004EEC69F	UniProt:A0A078HB07
MapMan:35.1	:	:	:	:	:

Description

BnaC05g27010DBnaC05g27010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HB07]

Coordinates

chrLK032355:-:233837..234031

Molecular Weight (calculated)

7064.4 Da

IEP (calculated)

9.460

GRAVY (calculated)

-0.473

Length

64 amino acids

Sequence
(BLAST)

1: MASRPPFETH FSSIFGSSFP RSTSDEPTVQ TSGVKLPVID LSHLTNGEEV KRKRCVKQMV DAAK

Best Arabidopsis Sequence Match ( AT1G50960.1 )
(BLAST)

001: MASQPPFKTN FCSIFGSSFP NSTSESNTNT STIQTSGIKL PVIDLSHLTS GEEVKRKRCV KQMVAAAKEW GFFQIVNHGI PKDVFEMMLL EEKKLFDQPF
101: SVKVRERFSD LSKNSYRWGN PSATSPAQYS VSEAFHIILS EVSRISDDRN NLRTIVETYV QEIARVAQMI CEILGKQVNV SSEYFENIFE LENSFLRLNK
201: YHPSVFGSEV FGLVPHTDTS FLTILSQDQI GGLELENNGQ WISVKPCLEA LTVNIGDMFQ ALSNGVYQSV RHRVISPANI ERMSIAFFVC PYLETEIDCF
301: GYPKKYRRFS FREYKEQSEH DVKETGDKVG LSRFLI

Arabidopsis Description

GA2OX7Gibberellin 2-beta-dioxygenase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6I4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.