CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82811	Canola	cytosol, nucleus, peroxisome	98.22	98.22
CDX94029	Canola	cytosol	90.83	90.83
CDX76423	Canola	cytosol, peroxisome, plastid	49.41	90.76
CDY47108	Canola	cytosol, peroxisome, plastid	49.41	90.76
AT4G21200.1	Thale cress	cytosol, nucleus, peroxisome	86.39	86.39
CDY71106	Canola	cytosol	38.46	79.27
CDY47111	Canola	cytosol	37.87	79.01
Bra013512.1-P	Field mustard	cytosol	52.66	70.92
GSMUA_Achr9P11880_001	Banana	cytosol, nucleus, peroxisome	51.78	53.68
GSMUA_Achr6P21950_001	Banana	cytosol, nucleus, peroxisome	50.59	49.28
CDY52119	Canola	cytosol, nucleus, peroxisome	17.16	45.67
CDX80345	Canola	cytosol, nucleus, peroxisome	16.57	44.09
CDY35579	Canola	cytosol, nucleus, peroxisome	31.07	42.17
GSMUA_Achr8P03660_001	Banana	endoplasmic reticulum, golgi	51.78	41.87
CDY32695	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	22.49	37.25
CDY02826	Canola	cytosol	31.66	28.23
CDY10932	Canola	cytosol, nucleus, peroxisome	26.92	28.0
CDX94181	Canola	cytosol, nucleus, peroxisome	26.92	28.0
CDY56648	Canola	cytosol, nucleus, peroxisome	25.44	26.71
CDY35580	Canola	plastid	5.03	26.56
CDX91575	Canola	cytosol, nucleus, peroxisome	24.85	26.09
CDY29619	Canola	plastid	38.17	17.55

Protein Annotations

Gene3D:2.60.120.330	MapMan:50.1.13	GO:A0A078CQD2	EnsemblPlants:CDX79045	ProteinID:CDX79045	ProteinID:CDX79045.1
ncoils:Coil	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00131576001	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443
InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF386
SUPFAM:SSF51197	UniParc:UPI0004EEE7DD	:	:	:	:

Description

BnaA01g11120D

Coordinates

chrLK031816:+:1495956..1500081

Molecular Weight (calculated)

38970.3 Da

IEP (calculated)

6.264

GRAVY (calculated)

-0.420

Length

338 amino acids

Sequence
(BLAST)

001: MDPPFNDMYN TLFYKQITNT ESNVPEVPFS FSVTAVVEEV ELPVIDVSLL MDGAKKEREK CKEEIARASR EWGFFQVINH GISMDVLEKM RQEQIRVFRE
101: PFVKKSTSDT FSAGSYRWGT PSATCLRQLS WSEAFHVPMT DISDNKDFTS LSSAMERFAS ESEALAHTLA EVLAEKLERK SNFFKENCVR NTCYVRMNRY
201: PPCPKPSEVY GLMPHTDSDF LTILYQDQVG GLQLIKDNRW VAVKPNPRAL IINIGDLFQA WSNGMYKSVE HRVMTNPTVE RFSTAYFLCP SYDAVIECSG
301: DCPSYRNFSF REFRQQVQDD VKKLGYKVGL PRFSNHLY

Best Arabidopsis Sequence Match ( AT4G21200.1 )
(BLAST)

001: MDPPFNEIYN NLLYNQITKK DNDVSEIPFS FSVTAVVEEV ELPVIDVSRL IDGAEEEREK CKEAIARASR EWGFFQVINH GISMDVLEKM RQEQIRVFRE
101: PFDKKSKSEK FSAGSYRWGT PSATSIRQLS WSEAFHVPMT DISDNKDFTT LSSTMEKFAS ESEALAYMLA EVLAEKSGQN SSFFKENCVR NTCYLRMNRY
201: PPCPKPSEVY GLMPHTDSDF LTILYQDQVG GLQLIKDNRW IAVKPNPKAL IINIGDLFQA WSNGMYKSVE HRVMTNPKVE RFSTAYFMCP SYDAVIECSS
301: DRPAYRNFSF REFRQQVQED VKKFGFKVGL PRFLNHVY

Arabidopsis Description

GA2OX8Gibberellin 2-beta-dioxygenase 8 [Source:UniProtKB/Swiss-Prot;Acc:O49561]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.