CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56648	Canola	cytosol, nucleus, peroxisome	95.96	95.96
AT5G51310.1	Thale cress	cytosol, nucleus, peroxisome	88.2	87.38
GSMUA_Achr1P03100_001	Banana	cytosol	56.21	56.92
CDX94181	Canola	cytosol, nucleus, peroxisome	53.11	52.62
CDY10932	Canola	cytosol, nucleus, peroxisome	52.48	52.0
CDX76423	Canola	cytosol, peroxisome, plastid	16.77	29.35
CDY47108	Canola	cytosol, peroxisome, plastid	16.77	29.35
CDY35579	Canola	cytosol, nucleus, peroxisome	20.5	26.51
CDX94029	Canola	cytosol	26.4	25.15
CDX82811	Canola	cytosol, nucleus, peroxisome	26.09	24.85
CDX79045	Canola	cytosol, nucleus, peroxisome	26.09	24.85
CDY52119	Canola	cytosol, nucleus, peroxisome	9.32	23.62
CDX80345	Canola	cytosol, nucleus, peroxisome	9.01	22.83
CDY32695	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	14.29	22.55
CDY47111	Canola	cytosol	10.25	20.37
CDY71106	Canola	cytosol	9.94	19.51
CDY02826	Canola	cytosol	22.05	18.73
CDY35580	Canola	plastid	3.42	17.19
CDY29619	Canola	plastid	25.78	11.29

Protein Annotations

Gene3D:2.60.120.330	MapMan:50.1.13	GO:A0A078DQJ1	EnsemblPlants:CDX91575	ProteinID:CDX91575	ProteinID:CDX91575.1
InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00152978001	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF378	SUPFAM:SSF51197
UniParc:UPI0004EEA46B	SEG:seg	:	:	:	:

Description

BnaC02g15850D

Coordinates

chrLK031868:-:555493..557754

Molecular Weight (calculated)

36849.3 Da

IEP (calculated)

4.977

GRAVY (calculated)

-0.496

Length

322 amino acids

Sequence
(BLAST)

001: MSVELPVFDI SKPLNESSLT SLQDACKEWG FFYVTSHGIS GDMYQKLRRF SGGIFGLRDE DKIKMGASNY TPRFIASPFF ESLRVSGPDF YASAKSSIDA
101: FSDQPTDEEF SELMKEYGEK MTELCEKIMK AILSSFGEDL HHKYYKSEFG NCHGYFRINN YTIPLEQDHQ EDDVDLLEGL GMHTDMSCIT IVDQDDIGGL
201: QVRTRDGIGL MDINPKDEAL VVNVGDLLHA WTNGRLRSSQ HRVVLKRHSF VENRFSLAFF WCFEDQKVVF APDEVVGGGE RGRVFRSFKC GDYLRFRESN
301: EKGKFEKVGH TVEDFARTED RN

Best Arabidopsis Sequence Match ( AT5G51310.1 )
(BLAST)

001: MSLELPVFDI SKPLSESSLT SLQDACKEWG FFYVTNHGVS RDMYKKLRRF STGVFELEDE EKMKMGASNY TPRFIASPFF ESLRVSGPDF YASAKSSVDA
101: FSDQATDEEF SGLMKEYGEK MTKLCEKIMK AILSSFGDDL HHKYYESEFG NCHGYFRINN YTIPSDQEDD HHNGDEQDLI EGLGMHTDMS CITIVDQDDI
201: GGLQVRTRDG IGLMDINPKD EALVVNVGDL LHAWTNGRLR SSQHRVILKR RGFVGNRFSL AFFWCFDDGK VVFAPDEVVG GCEGMRVFRS FKCGDYLRFR
301: ESNEKGKFEK VGDTVEDFAR IEDRR

Arabidopsis Description

Gibberellin 20-oxidase-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4KBY0]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.